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4JZZ
Asym. Unit
Info
Asym.Unit (149 KB)
Biol.Unit 1 (140 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CD4-MIMETIC MINIPROTEIN M48U1 IN COMPLEX WITH HIV-1 YU2 GP120 IN C2221 SPACE GROUP
Authors
:
P. Acharya, P. D. Kwong
Date
:
03 Apr 13 (Deposition) - 12 Jun 13 (Release) - 10 Jul 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.49
Chains
:
Asym. Unit : A,R
Biol. Unit 1: A,R (1x)
Keywords
:
Hiv-1 Attachment Protein Gp120, Hiv-1 Envelope, Viral Protein- Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Acharya, T. S. Luongo, M. K. Louder, K. Mckee, Y. Yang, Y. Do Kwon, J. R. Mascola, P. Kessler, L. Martin, P. D. Kwong
Structural Basis For Highly Effective Hiv-1 Neutralization By Cd4-Mimetic Miniproteins Revealed By 1. 5 A Cocrystal Structure Of Gp120 And M48U1.
Structure V. 21 1018 2013
[
close entry info
]
Hetero Components
(8, 24)
Info
All Hetero Components
1a: D-PROLINE (DPRa)
2a: CITRATE ANION (FLCa)
3a: ISOPROPYL ALCOHOL (IPAa)
3b: ISOPROPYL ALCOHOL (IPAb)
3c: ISOPROPYL ALCOHOL (IPAc)
3d: ISOPROPYL ALCOHOL (IPAd)
3e: ISOPROPYL ALCOHOL (IPAe)
4a: BETA-MERCAPTOPROPIONIC ACID (MPTa)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
6c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6d: N-ACETYL-D-GLUCOSAMINE (NAGd)
6e: N-ACETYL-D-GLUCOSAMINE (NAGe)
6f: N-ACETYL-D-GLUCOSAMINE (NAGf)
6g: N-ACETYL-D-GLUCOSAMINE (NAGg)
6h: N-ACETYL-D-GLUCOSAMINE (NAGh)
5a: SODIUM ION (NAa)
5b: SODIUM ION (NAb)
5c: SODIUM ION (NAc)
5d: SODIUM ION (NAd)
5e: SODIUM ION (NAe)
5f: SODIUM ION (NAf)
7a: AMINO GROUP (NH2a)
8a: O-(CYCLOHEXYLMETHYL)-L-TYROSINE (U2Xa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DPR
1
Mod. Amino Acid
D-PROLINE
2
FLC
1
Ligand/Ion
CITRATE ANION
3
IPA
5
Ligand/Ion
ISOPROPYL ALCOHOL
4
MPT
1
Mod. Amino Acid
BETA-MERCAPTOPROPIONIC ACID
5
NA
6
Ligand/Ion
SODIUM ION
6
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
7
NH2
1
Mod. Amino Acid
AMINO GROUP
8
U2X
1
Mod. Amino Acid
O-(CYCLOHEXYLMETHYL)-L-TYROSINE
[
close Hetero Component info
]
Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
VAL A:372 , THR A:373 , ASN A:386 , SER A:387 , HOH A:713
BINDING SITE FOR RESIDUE NA A 509
02
AC2
SOFTWARE
ALA A:73 , VAL A:75 , MET A:434
BINDING SITE FOR RESIDUE IPA A 510
03
AC3
SOFTWARE
HOH A:690
BINDING SITE FOR RESIDUE IPA A 511
04
AC4
SOFTWARE
ASN A:262 , SER A:446 , ASN A:448 , NAG A:508
BINDING SITE FOR RESIDUE IPA A 512
05
AC5
SOFTWARE
TRP A:45 , LEU A:86 , GLU A:91
BINDING SITE FOR RESIDUE IPA A 513
06
AC6
SOFTWARE
VAL A:254 , SER A:256 , LEU A:260 , LEU A:261 , HOH A:852
BINDING SITE FOR RESIDUE NA A 514
07
AC7
SOFTWARE
SER A:364 , HOH A:713 , HOH A:784
BINDING SITE FOR RESIDUE NA A 515
08
AC8
SOFTWARE
HIS A:66 , TRP A:112 , PHE A:210 , PRO A:253 , HOH A:604
BINDING SITE FOR RESIDUE NA A 516
09
AC9
SOFTWARE
PHE A:210 , PRO A:212 , ASN A:377 , NAG A:504 , HOH A:604 , HOH A:621
BINDING SITE FOR RESIDUE NA A 517
10
BC1
SOFTWARE
ILE A:109 , ASP A:113 , GLU A:429 , HOH A:875
BINDING SITE FOR RESIDUE NA A 518
11
BC2
SOFTWARE
PRO A:369 , LYS A:421 , HOH A:901 , HOH A:952
BINDING SITE FOR RESIDUE IPA A 519
12
BC3
SOFTWARE
HIS A:72 , GLN A:114 , ARG A:327 , ARG A:419 , ILE A:420 , LYS A:421 , GLN A:422 , ILE A:423 , HOH A:780 , HOH A:850
BINDING SITE FOR RESIDUE FLC A 520
13
BC4
SOFTWARE
ASN A:234 , THR A:236 , SER A:274 , HOH A:672
BINDING SITE FOR MONO-SACCHARIDE NAG A 502 BOUND TO ASN A 234
14
BC5
SOFTWARE
LYS A:85 , ASN A:229 , ASN A:241
BINDING SITE FOR MONO-SACCHARIDE NAG A 503 BOUND TO ASN A 241
15
BC6
SOFTWARE
GLU A:211 , ASN A:262 , CYS A:445 , SER A:446 , SER A:447 , NAG A:508 , NA A:517 , HOH A:607 , HOH A:645 , HOH A:650 , HOH A:858
BINDING SITE FOR MONO-SACCHARIDE NAG A 504 BOUND TO ASN A 262
16
BC7
SOFTWARE
VAL A:44 , LYS A:46 , ASN A:92 , ASN A:276 , THR A:278 , ASN A:279 , HOH A:657 , HOH A:683 , HOH A:817 , HOH A:856
BINDING SITE FOR MONO-SACCHARIDE NAG A 501 BOUND TO ASN A 276
17
BC8
SOFTWARE
GLU A:268 , GLU A:269 , ILE A:270 , ASN A:289 , GLU A:290 , GLN A:344 , LYS A:348 , GLU A:351 , HOH A:634 , HOH A:789 , HOH A:921 , HOH A:927
BINDING SITE FOR MONO-SACCHARIDE NAG A 505 BOUND TO ASN A 289
18
BC9
SOFTWARE
PRO A:79 , ASN A:80 , ASN A:295 , LEU A:333 , ASN A:413 , ARG A:444 , HOH A:735 , HOH A:768
BINDING SITE FOR MONO-SACCHARIDE NAG A 506 BOUND TO ASN A 295
19
CC1
SOFTWARE
ASN A:386 , THR A:388 , HOH A:673 , HOH A:766
BINDING SITE FOR MONO-SACCHARIDE NAG A 507 BOUND TO ASN A 386
20
CC2
SOFTWARE
SER A:291 , ASN A:448 , NAG A:504 , IPA A:512 , HOH A:622 , HOH A:670
BINDING SITE FOR MONO-SACCHARIDE NAG A 508 BOUND TO ASN A 448
21
CC3
SOFTWARE
LYS A:207 , SER A:209 , VAL A:255 , SER A:365 , GLY A:366 , GLY A:367 , ASP A:368 , GLU A:370 , ILE A:371 , SER A:375 , PHE A:376 , PHE A:382 , ASN A:425 , MET A:426 , TRP A:427 , GLU A:429 , VAL A:430 , GLY A:472 , GLY A:473 , MET A:475 , HOH A:606 , HOH A:613 , HOH A:788 , HOH A:859 , HOH A:883 , HOH R:101 , HOH R:102 , HOH R:103 , HOH R:104 , HOH R:106 , HOH R:107 , HOH R:109 , HOH R:110 , HOH R:111 , HOH R:112 , HOH R:113 , HOH R:115 , HOH R:116 , HOH R:117
BINDING SITE FOR CHAIN R OF CD4-MIMETIC MINIPROTEIN M48U1
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
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Sorry, no Info available
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Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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