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Asym. Unit
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Asym.Unit (338 KB)
Biol.Unit 1 (329 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ANABOLIC ORNITHINE CARBAMOYLTRANSFERASE FROM VIBRIO VULNIFICUS IN COMPLEX WITH CITRULLINE AND INORGANIC PHOSPHATE
Authors
:
I. G. Shabalin, J. Winsor, S. Grimshaw, M. J. Domagalski, W. F. Anderson Center For Structural Genomics Of Infectious Diseases (Csgi
Date
:
20 Mar 13 (Deposition) - 17 Apr 13 (Release) - 17 Apr 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.08
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Structural Genomics, Niaid, National Institute Of Allergy And Infectious Diseases, Center For Structural Genomics Of Infectious Diseases, Csgid, Transferase, Carbamoyl Phosphate, L-Ornithine
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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Reference
:
I. G. Shabalin, J. Winsor, S. Grimshaw, W. Minor
Crystal Structures And Kinetic Properties Of Anabolic Ornithine Carbamoyltransferase From Human Pathogens Vibrio Vulnificus And Bacillus Anthracis
To Be Published
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Hetero Components
(4, 16)
Info
All Hetero Components
1a: CITRULLINE (CIRa)
1b: CITRULLINE (CIRb)
1c: CITRULLINE (CIRc)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
3a: DI(HYDROXYETHYL)ETHER (PEGa)
3b: DI(HYDROXYETHYL)ETHER (PEGb)
3c: DI(HYDROXYETHYL)ETHER (PEGc)
3d: DI(HYDROXYETHYL)ETHER (PEGd)
3e: DI(HYDROXYETHYL)ETHER (PEGe)
3f: DI(HYDROXYETHYL)ETHER (PEGf)
3g: DI(HYDROXYETHYL)ETHER (PEGg)
4a: PHOSPHATE ION (PO4a)
4b: PHOSPHATE ION (PO4b)
4c: PHOSPHATE ION (PO4c)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CIR
3
Ligand/Ion
CITRULLINE
2
CL
3
Ligand/Ion
CHLORIDE ION
3
PEG
7
Ligand/Ion
DI(HYDROXYETHYL)ETHER
4
PO4
3
Ligand/Ion
PHOSPHATE ION
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:57 , THR A:58 , ARG A:59 , THR A:60 , ARG A:108 , CIR A:402 , GLN B:84
BINDING SITE FOR RESIDUE PO4 A 401
02
AC2
SOFTWARE
THR A:60 , ARG A:108 , HIS A:135 , GLN A:138 , ASN A:169 , ASP A:233 , SER A:237 , MET A:238 , CYS A:275 , LEU A:276 , ARG A:320 , PO4 A:401 , HOH A:598 , HOH B:619
BINDING SITE FOR RESIDUE CIR A 402
03
AC3
SOFTWARE
LEU A:13 , PHE A:134 , PRO A:136 , SER A:173 , HOH A:510
BINDING SITE FOR RESIDUE CL A 403
04
AC4
SOFTWARE
LEU A:262 , ASN A:267 , PRO A:268 , HOH A:654
BINDING SITE FOR RESIDUE PEG A 404
05
AC5
SOFTWARE
GLY A:295 , HOH A:569
BINDING SITE FOR RESIDUE PEG A 405
06
AC6
SOFTWARE
ARG A:167 , ALA A:192
BINDING SITE FOR RESIDUE PEG A 406
07
AC7
SOFTWARE
SER B:57 , THR B:58 , ARG B:59 , THR B:60 , ARG B:108 , CIR B:402 , GLN C:84
BINDING SITE FOR RESIDUE PO4 B 401
08
AC8
SOFTWARE
THR B:60 , ARG B:108 , HIS B:135 , GLN B:138 , ASN B:169 , ASP B:233 , SER B:237 , MET B:238 , CYS B:275 , LEU B:276 , ARG B:320 , PO4 B:401 , HOH B:523 , HOH C:515
BINDING SITE FOR RESIDUE CIR B 402
09
AC9
SOFTWARE
LEU B:13 , PHE B:134 , PRO B:136 , SER B:173 , HOH B:522
BINDING SITE FOR RESIDUE CL B 403
10
BC1
SOFTWARE
LEU B:262 , ASN B:267 , PRO B:268 , HIS B:310
BINDING SITE FOR RESIDUE PEG B 404
11
BC2
SOFTWARE
GLU A:307 , HOH B:622
BINDING SITE FOR RESIDUE PEG B 405
12
BC3
SOFTWARE
GLN A:84 , SER C:57 , THR C:58 , ARG C:59 , THR C:60 , ARG C:108 , CIR C:402
BINDING SITE FOR RESIDUE PO4 C 401
13
BC4
SOFTWARE
THR C:60 , ARG C:108 , LEU C:130 , HIS C:135 , GLN C:138 , ASN C:169 , ASP C:233 , SER C:237 , MET C:238 , CYS C:275 , LEU C:276 , ARG C:320 , PO4 C:401 , HOH C:520 , HOH C:537
BINDING SITE FOR RESIDUE CIR C 402
14
BC5
SOFTWARE
LEU C:13 , SER C:173
BINDING SITE FOR RESIDUE CL C 403
15
BC6
SOFTWARE
LEU C:262 , LYS C:263 , ASN C:267 , HIS C:310
BINDING SITE FOR RESIDUE PEG C 404
16
BC7
SOFTWARE
LYS C:213 , THR C:215
BINDING SITE FOR RESIDUE PEG C 405
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d4jqoa1 (A:-3-152)
1b: SCOP_d4jqoa2 (A:153-334)
1c: SCOP_d4jqob1 (B:-5-152)
1d: SCOP_d4jqob2 (B:153-334)
1e: SCOP_d4jqoc1 (C:1-152)
1f: SCOP_d4jqoc2 (C:153-334)
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ATC-like
(129)
Superfamily
:
Aspartate/ornithine carbamoyltransferase
(122)
Family
:
automated matches
(35)
Protein domain
:
automated matches
(35)
Vibrio vulnificus [TaxId: 216895]
(6)
1a
d4jqoa1
A:-3-152
1b
d4jqoa2
A:153-334
1c
d4jqob1
B:-5-152
1d
d4jqob2
B:153-334
1e
d4jqoc1
C:1-152
1f
d4jqoc2
C:153-334
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (338 KB)
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