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4JQG
Asym. Unit
Info
Asym.Unit (77 KB)
Biol.Unit 1 (37 KB)
Biol.Unit 2 (36 KB)
Biol.Unit 3 (70 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AN INACTIVE MUTANT OF MMP-9 CATALYTIC DOMAIN IN COMPLEX WITH A FLUOROGENIC SYNTHETIC PEPTIDIC SUBSTRATE WITH A FLUORINE ATOM.
Authors
:
E. A. Stura, L. Vera, E. Cassar-Lajeunesse, I. Tranchant, M. Amoura, V.
Date
:
20 Mar 13 (Deposition) - 12 Mar 14 (Release) - 16 Apr 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A,B,P,Q
Biol. Unit 1: A,P (1x)
Biol. Unit 2: B,Q (1x)
Biol. Unit 3: A,B,P,Q (1x)
Keywords
:
Halogen-Water-Hydrogen Bridge, Zincin-Like, Gelatinase, Collagenase, Catalytic Domain, Hydrolase-Substrate Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. Tranchant, L. Vera, B. Czarny, M. Amoura, E. Cassar, F. Beau, E. A. Stura, V. Dive
Halogen Bonding Controls Selectivity Of Fret Substrate Probes For Mmp-9.
Chem. Biol. V. 21 408 2014
[
close entry info
]
Hetero Components
(12, 33)
Info
All Hetero Components
01a: (7-METHOXY-2-OXO-2H-CHROMEN-4-YL)A... (8MCa)
01b: (7-METHOXY-2-OXO-2H-CHROMEN-4-YL)A... (8MCb)
02a: AZIDE ION (AZIa)
02b: AZIDE ION (AZIb)
03a: CALCIUM ION (CAa)
03b: CALCIUM ION (CAb)
03c: CALCIUM ION (CAc)
04a: 3-[(2,4-DINITROPHENYL)AMINO]-L-ALA... (DNWa)
04b: 3-[(2,4-DINITROPHENYL)AMINO]-L-ALA... (DNWb)
05a: 1,2-ETHANEDIOL (EDOa)
05b: 1,2-ETHANEDIOL (EDOb)
05c: 1,2-ETHANEDIOL (EDOc)
05d: 1,2-ETHANEDIOL (EDOd)
05e: 1,2-ETHANEDIOL (EDOe)
05f: 1,2-ETHANEDIOL (EDOf)
05g: 1,2-ETHANEDIOL (EDOg)
06a: GLYCEROL (GOLa)
07a: SODIUM ION (NAa)
07b: SODIUM ION (NAb)
07c: SODIUM ION (NAc)
08a: AMINO GROUP (NH2a)
08b: AMINO GROUP (NH2b)
09a: 4-FLUORO-L-PHENYLALANINE (PFFa)
09b: 4-FLUORO-L-PHENYLALANINE (PFFb)
10a: S-1,2-PROPANEDIOL (PGOa)
10b: S-1,2-PROPANEDIOL (PGOb)
11a: STRONTIUM ION (SRa)
11b: STRONTIUM ION (SRb)
11c: STRONTIUM ION (SRc)
12a: ZINC ION (ZNa)
12b: ZINC ION (ZNb)
12c: ZINC ION (ZNc)
12d: ZINC ION (ZNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
8MC
2
Mod. Amino Acid
(7-METHOXY-2-OXO-2H-CHROMEN-4-YL)ACETIC ACID
2
AZI
2
Ligand/Ion
AZIDE ION
3
CA
3
Ligand/Ion
CALCIUM ION
4
DNW
2
Mod. Amino Acid
3-[(2,4-DINITROPHENYL)AMINO]-L-ALANINE
5
EDO
7
Ligand/Ion
1,2-ETHANEDIOL
6
GOL
1
Ligand/Ion
GLYCEROL
7
NA
3
Ligand/Ion
SODIUM ION
8
NH2
2
Mod. Amino Acid
AMINO GROUP
9
PFF
2
Mod. Amino Acid
4-FLUORO-L-PHENYLALANINE
10
PGO
2
Ligand/Ion
S-1,2-PROPANEDIOL
11
SR
3
Ligand/Ion
STRONTIUM ION
12
ZN
4
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(25, 25)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:189 , HIS A:190 , HIS A:226 , ALA A:227 , HIS A:230 , ZN A:301 , LEU P:3 , GLY P:4 , PFF P:5
BINDING SITE FOR RESIDUE AZI P 600
02
AC2
SOFTWARE
HIS A:226 , HIS A:230 , HIS A:236 , GLY P:4 , AZI P:600
BINDING SITE FOR RESIDUE ZN A 301
03
AC3
SOFTWARE
HIS A:175 , ASP A:177 , HIS A:190 , HIS A:203
BINDING SITE FOR RESIDUE ZN A 302
04
AC4
SOFTWARE
ASP A:182 , GLY A:183 , ASP A:185 , LEU A:187 , ASP A:205 , GLU A:208
BINDING SITE FOR RESIDUE CA A 303
05
AC5
SOFTWARE
ASP A:165 , GLY A:197 , GLN A:199 , ASP A:201 , HOH A:414 , HOH A:562 , HOH A:581
BINDING SITE FOR RESIDUE SR A 304
06
AC6
SOFTWARE
ASP A:131 , ASP A:206 , GLU A:208 , PGO A:312 , HOH A:577
BINDING SITE FOR RESIDUE CA A 305
07
AC7
SOFTWARE
LYS A:115 , ARG A:265 , LEU A:267 , GLY A:269 , PHE B:107
BINDING SITE FOR RESIDUE EDO A 306
08
AC8
SOFTWARE
LEU A:114 , GLY A:233 , LEU A:234 , ASP A:235 , HOH A:425
BINDING SITE FOR RESIDUE GOL A 307
09
AC9
SOFTWARE
LEU A:187 , HIS A:190 , HOH A:411 , PRO P:2
BINDING SITE FOR RESIDUE EDO A 308
10
BC1
SOFTWARE
ALA A:242 , LEU A:243 , ARG A:249 , HOH A:446 , HOH A:447 , HOH A:557 , PFF P:5
BINDING SITE FOR RESIDUE EDO A 309
11
BC2
SOFTWARE
LYS A:115 , TRP A:116 , HIS A:117 , HIS A:118 , EDO A:311 , HOH A:438 , HOH A:589
BINDING SITE FOR RESIDUE EDO A 310
12
BC3
SOFTWARE
GLY A:195 , PRO A:196 , EDO A:310 , HOH A:448
BINDING SITE FOR RESIDUE EDO A 311
13
BC4
SOFTWARE
ASP A:131 , GLY A:197 , ASP A:207 , GLU A:208 , LEU A:209 , CA A:305 , HOH A:450 , HOH A:518 , HOH A:576
BINDING SITE FOR RESIDUE PGO A 312
14
BC5
SOFTWARE
ALA B:189 , HIS B:190 , HIS B:226 , ALA B:227 , HIS B:230 , ZN B:301 , LEU Q:3 , GLY Q:4 , PFF Q:5
BINDING SITE FOR RESIDUE AZI Q 600
15
BC6
SOFTWARE
HIS B:226 , HIS B:230 , HIS B:236 , GLY Q:4 , AZI Q:600
BINDING SITE FOR RESIDUE ZN B 301
16
BC7
SOFTWARE
HIS B:175 , ASP B:177 , HIS B:190 , HIS B:203
BINDING SITE FOR RESIDUE ZN B 302
17
BC8
SOFTWARE
ASP B:182 , GLY B:183 , ASP B:185 , LEU B:187 , ASP B:205 , GLU B:208
BINDING SITE FOR RESIDUE CA B 303
18
BC9
SOFTWARE
ALA B:164 , ASP B:165 , GLY B:197 , GLN B:199 , ASP B:201 , HOH B:448 , HOH B:451
BINDING SITE FOR RESIDUE SR B 304
19
CC1
SOFTWARE
ASP B:131 , ASP B:206 , GLU B:208 , PGO B:306 , HOH B:420
BINDING SITE FOR RESIDUE SR B 305
20
CC2
SOFTWARE
ASP B:131 , LYS B:184 , ASP B:206 , ASP B:207 , GLU B:208 , LEU B:209 , SR B:305 , HOH B:500 , HOH B:574
BINDING SITE FOR RESIDUE PGO B 306
21
CC3
SOFTWARE
TYR B:179 , HIS B:190 , HOH B:491 , PRO Q:2
BINDING SITE FOR RESIDUE EDO B 307
22
CC4
SOFTWARE
HIS B:119
BINDING SITE FOR RESIDUE EDO B 308
23
CC5
SOFTWARE
PRO A:255 , HOH A:432 , PRO B:255 , HOH B:402 , HOH B:464 , HOH B:593
BINDING SITE FOR RESIDUE NA B 309
24
CC6
SOFTWARE
HOH B:433 , HOH B:434 , HOH B:435 , HOH B:510 , HOH B:584
BINDING SITE FOR RESIDUE NA B 310
25
CC7
SOFTWARE
HIS B:117 , HIS B:118
BINDING SITE FOR RESIDUE NA B 311
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Info
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
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CATH Domains
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Info
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Pfam Domains
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Asym.Unit (77 KB)
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