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4JGT
Biol. Unit 3
Info
Asym.Unit (148 KB)
Biol.Unit 1 (50 KB)
Biol.Unit 2 (49 KB)
Biol.Unit 3 (50 KB)
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(1)
Title
:
STRUCTURE AND KINETIC ANALYSIS OF H2S PRODUCTION BY HUMAN MERCAPTOPYRUVATE SULFURTRANSFERASE
Authors
:
M. Koutmos, K. Yamada, P. K. Yadav, T. Chiku, R. Banerjee
Date
:
03 Mar 13 (Deposition) - 29 May 13 (Release) - 24 Jul 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.16
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Rhodanese, Transferase, 3-Mercaptopyruvate Sulfurtransferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. K. Yadav, K. Yamada, T. Chiku, M. Koutmos, R. Banerjee
Structure And Kinetic Analysis Of H2S Production By Human Mercaptopyruvate Sulfurtransferase.
J. Biol. Chem. V. 288 20002 2013
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Hetero Components
(4, 7)
Info
All Hetero Components
1a: S-MERCAPTOCYSTEINE (CSSa)
1b: S-MERCAPTOCYSTEINE (CSSb)
1c: S-MERCAPTOCYSTEINE (CSSc)
2a: GLYCEROL (GOLa)
3a: PYRUVIC ACID (PYRa)
3b: PYRUVIC ACID (PYRb)
3c: PYRUVIC ACID (PYRc)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
View:
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No.
Name
Count
Type
Full Name
1
CSS
1
Mod. Amino Acid
S-MERCAPTOCYSTEINE
2
GOL
1
Ligand/Ion
GLYCEROL
3
PYR
1
Ligand/Ion
PYRUVIC ACID
4
SO4
4
Ligand/Ion
SULFATE ION
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Sites
(7, 7)
Info
All Sites
1: AC3 (SOFTWARE)
2: AC7 (SOFTWARE)
3: AC8 (SOFTWARE)
4: AC9 (SOFTWARE)
5: BC1 (SOFTWARE)
6: BC2 (SOFTWARE)
7: BC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC3
SOFTWARE
TRP A:15 , ARG A:24 , GLN A:27 , HIS A:96 , TRP C:15 , ARG C:24 , GLN C:27 , HIS C:96 , HOH C:614
BINDING SITE FOR RESIDUE SO4 A 403
2
AC7
SOFTWARE
TRP C:36 , TYR C:108 , ARG C:188 , ARG C:197 , CSS C:248 , GLY C:249 , SER C:250 , HOH C:535 , HOH C:547
BINDING SITE FOR RESIDUE PYR C 401
3
AC8
SOFTWARE
SER C:66 , ASP C:67 , ARG C:68 , PRO C:77 , GLY C:78 , HIS C:81 , HOH C:501
BINDING SITE FOR RESIDUE SO4 C 402
4
AC9
SOFTWARE
ARG C:118 , HIS C:123 , TYR C:262 , HOH C:606
BINDING SITE FOR RESIDUE SO4 C 403
5
BC1
SOFTWARE
ALA C:79 , GLU C:80 , HOH C:501 , HOH C:506 , HOH C:611
BINDING SITE FOR RESIDUE SO4 C 404
6
BC2
SOFTWARE
ALA C:25 , GLY C:26 , PRO C:28 , HOH C:526
BINDING SITE FOR RESIDUE SO4 C 405
7
BC3
SOFTWARE
GLY B:207 , HIS C:204 , PRO C:206 , GLY C:207
BINDING SITE FOR RESIDUE GOL C 406
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d4jgta1 (A:9-151)
1b: SCOP_d4jgta2 (A:152-288)
1c: SCOP_d4jgtb1 (B:8-151)
1d: SCOP_d4jgtb2 (B:152-288)
1e: SCOP_d4jgtc1 (C:9-151)
1f: SCOP_d4jgtc2 (C:152-288)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Rhodanese/Cell cycle control phosphatase
(39)
Superfamily
:
Rhodanese/Cell cycle control phosphatase
(39)
Family
:
automated matches
(3)
Protein domain
:
automated matches
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d4jgta1
A:9-151
1b
d4jgta2
A:152-288
1c
d4jgtb1
B:8-151
1d
d4jgtb2
B:152-288
1e
d4jgtc1
C:9-151
1f
d4jgtc2
C:152-288
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CATH Domains
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Pfam Domains
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Chain C
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (148 KB)
Header - Asym.Unit
Biol.Unit 1 (50 KB)
Header - Biol.Unit 1
Biol.Unit 2 (49 KB)
Header - Biol.Unit 2
Biol.Unit 3 (50 KB)
Header - Biol.Unit 3
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