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Asym. Unit
Info
Asym.Unit (429 KB)
Biol.Unit 1 (415 KB)
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(1)
Title
:
1.7 A RESOLUTION STRUCTURE OF WILD TYPE MALATE DEHYDROGENASE FROM HALOARCULA MARISMORTUI
Authors
:
F. M. D. Vellieux
Date
:
22 Feb 13 (Deposition) - 20 Mar 13 (Release) - 20 Mar 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Halophile, Oxidoreductase, Malate Dehydrogenase Tricarboxylic Acid Cycle
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. M. D. Vellieux
1. 7 A Resolution Structure Of Wild Type Malate Dehydrogenas From Haloarcula Marismortui
To Be Published
(for further references see the
PDB file header
)
[
close entry info
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Hetero Components
(2, 39)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
1i: CHLORIDE ION (CLi)
1j: CHLORIDE ION (CLj)
1k: CHLORIDE ION (CLk)
1l: CHLORIDE ION (CLl)
1m: CHLORIDE ION (CLm)
2a: SODIUM ION (NAa)
2b: SODIUM ION (NAb)
2c: SODIUM ION (NAc)
2d: SODIUM ION (NAd)
2e: SODIUM ION (NAe)
2f: SODIUM ION (NAf)
2g: SODIUM ION (NAg)
2h: SODIUM ION (NAh)
2i: SODIUM ION (NAi)
2j: SODIUM ION (NAj)
2k: SODIUM ION (NAk)
2l: SODIUM ION (NAl)
2m: SODIUM ION (NAm)
2n: SODIUM ION (NAn)
2o: SODIUM ION (NAo)
2p: SODIUM ION (NAp)
2q: SODIUM ION (NAq)
2r: SODIUM ION (NAr)
2s: SODIUM ION (NAs)
2t: SODIUM ION (NAt)
2u: SODIUM ION (NAu)
2v: SODIUM ION (NAv)
2w: SODIUM ION (NAw)
2x: SODIUM ION (NAx)
2y: SODIUM ION (NAy)
2z: SODIUM ION (NAz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
13
Ligand/Ion
CHLORIDE ION
2
NA
26
Ligand/Ion
SODIUM ION
[
close Hetero Component info
]
Sites
(39, 39)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:205 , ASP A:306 , THR D:210A , ASP D:211
BINDING SITE FOR RESIDUE CL A 401
02
AC2
SOFTWARE
ARG A:166 , HIS A:256 , TYR B:72 , ASP B:73 , HOH B:537
BINDING SITE FOR RESIDUE CL A 402
03
AC3
SOFTWARE
GLY A:69 , ILE A:70 , ALA A:71 , TYR A:72 , ASP A:73 , ARG B:166 , ARG B:252
BINDING SITE FOR RESIDUE CL A 403
04
AC4
SOFTWARE
HIS A:68 , GLY A:69 , ARG B:166 , GLY B:249
BINDING SITE FOR RESIDUE CL A 404
05
AC5
SOFTWARE
ASP A:47 , ASP C:264 , HOH C:818
BINDING SITE FOR RESIDUE NA A 405
06
AC6
SOFTWARE
SER A:91 , ASN A:131 , ASP A:132B , HOH A:577
BINDING SITE FOR RESIDUE NA A 406
07
AC7
SOFTWARE
TYR A:150 , GLU A:151 , GLY A:153 , HOH A:592 , HOH A:594
BINDING SITE FOR RESIDUE NA A 407
08
AC8
SOFTWARE
GLU A:247 , GLU B:247 , HOH B:556 , HOH B:773
BINDING SITE FOR RESIDUE NA A 408
09
AC9
SOFTWARE
ASP A:264 , HOH A:715 , ASP C:47 , HOH C:517
BINDING SITE FOR RESIDUE NA A 409
10
BC1
SOFTWARE
ASN A:67 , THR A:76 , HOH A:530 , TYR B:174 , HOH B:591
BINDING SITE FOR RESIDUE NA A 410
11
BC2
SOFTWARE
LYS B:205 , ASP B:306 , THR C:210A , ASP C:211
BINDING SITE FOR RESIDUE CL B 401
12
BC3
SOFTWARE
ARG B:171 , HOH B:542 , HOH B:602
BINDING SITE FOR RESIDUE CL B 402
13
BC4
SOFTWARE
VAL A:184 , HOH A:754 , ILE B:70 , SER B:74 , ASN B:75 , THR B:76 , HOH B:701
BINDING SITE FOR RESIDUE NA B 403
14
BC5
SOFTWARE
SER B:91 , ASP B:132B , HOH B:783 , HOH B:785 , HOH B:832
BINDING SITE FOR RESIDUE NA B 404
15
BC6
SOFTWARE
GLY B:196 , GLN B:199 , HOH B:604 , HOH B:724 , HOH B:805 , HOH B:858
BINDING SITE FOR RESIDUE NA B 405
16
BC7
SOFTWARE
ASP B:264 , HOH B:642 , ASP D:47 , HOH D:787
BINDING SITE FOR RESIDUE NA B 406
17
BC8
SOFTWARE
GLU B:151 , GLY B:153 , HOH B:800 , HOH B:821 , HOH B:854
BINDING SITE FOR RESIDUE NA B 407
18
BC9
SOFTWARE
GLY C:69 , ILE C:70 , ALA C:71 , TYR C:72 , ASP C:73 , ARG D:166 , ARG D:252
BINDING SITE FOR RESIDUE CL C 401
19
CC1
SOFTWARE
THR B:210A , ASP B:211 , LYS C:205 , ASP C:306
BINDING SITE FOR RESIDUE CL C 402
20
CC2
SOFTWARE
ARG C:166 , ARG C:252 , HIS C:256 , TYR D:72 , ASP D:73 , HOH D:544
BINDING SITE FOR RESIDUE CL C 403
21
CC3
SOFTWARE
ARG C:171 , THR C:246
BINDING SITE FOR RESIDUE CL C 404
22
CC4
SOFTWARE
ASP C:111 , ASP C:115 , HOH C:530 , HOH C:892
BINDING SITE FOR RESIDUE NA C 405
23
CC5
SOFTWARE
TYR C:150 , GLU C:151 , GLY C:153 , NA C:407 , HOH C:587 , HOH C:589
BINDING SITE FOR RESIDUE NA C 406
24
CC6
SOFTWARE
GLU C:151 , GLY C:153 , NA C:406 , NA C:410 , HOH C:698 , HOH C:751
BINDING SITE FOR RESIDUE NA C 407
25
CC7
SOFTWARE
SER C:177 , GLU C:178 , HOH C:599 , HOH C:604
BINDING SITE FOR RESIDUE NA C 408
26
CC8
SOFTWARE
ASP C:211 , PRO C:212 , GLU C:219 , HOH C:552 , HOH C:622
BINDING SITE FOR RESIDUE NA C 409
27
CC9
SOFTWARE
GLY C:153 , ASP C:154 , NA C:407 , HOH C:752 , HOH C:763
BINDING SITE FOR RESIDUE NA C 410
28
DC1
SOFTWARE
THR A:210A , ASP A:211 , HOH A:548 , LYS D:205 , ASP D:306
BINDING SITE FOR RESIDUE CL D 401
29
DC2
SOFTWARE
ARG D:171 , THR D:246 , HOH D:502 , HOH D:649
BINDING SITE FOR RESIDUE CL D 402
30
DC3
SOFTWARE
ARG C:166 , ARG C:252 , GLY D:69 , ILE D:70 , ALA D:71 , TYR D:72 , ASP D:73
BINDING SITE FOR RESIDUE CL D 403
31
DC4
SOFTWARE
THR D:22 , ILE D:45 , HOH D:520 , HOH D:708
BINDING SITE FOR RESIDUE NA D 404
32
DC5
SOFTWARE
HOH C:599 , ASN D:67 , THR D:76 , HOH D:540
BINDING SITE FOR RESIDUE NA D 405
33
DC6
SOFTWARE
SER D:91 , ASP D:132B , HOH D:553 , HOH D:554
BINDING SITE FOR RESIDUE NA D 406
34
DC7
SOFTWARE
TYR D:150 , GLU D:151 , GLY D:153 , NA D:408 , HOH D:597 , HOH D:806
BINDING SITE FOR RESIDUE NA D 407
35
DC8
SOFTWARE
GLU D:151 , GLY D:153 , NA D:407 , HOH D:752 , HOH D:807
BINDING SITE FOR RESIDUE NA D 408
36
DC9
SOFTWARE
SER D:204 , VAL D:206 , ASP D:211 , PRO D:212 , HOH D:621 , HOH D:629
BINDING SITE FOR RESIDUE NA D 409
37
EC1
SOFTWARE
HOH C:649 , HOH C:817 , THR D:31 , ALA D:35 , GLU D:247
BINDING SITE FOR RESIDUE NA D 410
38
EC2
SOFTWARE
HOH C:733 , SER D:177 , GLU D:178 , HOH D:722
BINDING SITE FOR RESIDUE NA D 411
39
EC3
SOFTWARE
GLY D:28 , GLY D:30 , ASP D:53 , HOH D:527 , HOH D:533 , HOH D:558 , HOH D:731
BINDING SITE FOR RESIDUE NA D 412
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d4jcoa2 (A:163-330)
1b: SCOP_d4jcob2 (B:163-330)
1c: SCOP_d4jcoc2 (C:163-330)
1d: SCOP_d4jcod2 (D:163-330)
2a: SCOP_d4jcoa1 (A:22-162)
2b: SCOP_d4jcob1 (B:22-162)
2c: SCOP_d4jcoc1 (C:22-162)
2d: SCOP_d4jcod1 (D:22-162)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
LDH C-terminal domain-like
(172)
Superfamily
:
LDH C-terminal domain-like
(172)
Family
:
Lactate & malate dehydrogenases, C-terminal domain
(125)
Protein domain
:
automated matches
(30)
Haloarcula marismortui [TaxId: 2238]
(4)
1a
d4jcoa2
A:163-330
1b
d4jcob2
B:163-330
1c
d4jcoc2
C:163-330
1d
d4jcod2
D:163-330
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
LDH N-terminal domain-like
(117)
Protein domain
:
automated matches
(15)
Haloarcula marismortui [TaxId: 2238]
(4)
2a
d4jcoa1
A:22-162
2b
d4jcob1
B:22-162
2c
d4jcoc1
C:22-162
2d
d4jcod1
D:22-162
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
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]
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