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4JCL
Asym. Unit
Info
Asym.Unit (221 KB)
Biol.Unit 1 (211 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ALPHA-CGT FROM PAENIBACILLUS MACERANS AT 1.7 ANGSTROM RESOLUTION
Authors
:
L. Wu, J. Zhou, J. Wu, J. Li, J. Chen
Date
:
22 Feb 13 (Deposition) - 26 Feb 14 (Release) - 26 Feb 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Alpha Beta Barrel, Calcium Binding, Alpha Cyclodextrin Glycosyltransferase, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Wu, J. Zhou, J. Wu, J. Li
Crystal Structure Of Alpha-Cgt From Paenibacillus Macerans At 1. 7 Angstrom Resolution
To Be Published
[
close entry info
]
Hetero Components
(6, 30)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
3h: 1,2-ETHANEDIOL (EDOh)
3i: 1,2-ETHANEDIOL (EDOi)
3j: 1,2-ETHANEDIOL (EDOj)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
4e: GLYCEROL (GOLe)
4f: GLYCEROL (GOLf)
4g: GLYCEROL (GOLg)
4h: GLYCEROL (GOLh)
4i: GLYCEROL (GOLi)
5a: DI(HYDROXYETHYL)ETHER (PEGa)
5b: DI(HYDROXYETHYL)ETHER (PEGb)
6a: TRIETHYLENE GLYCOL (PGEa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
4
Ligand/Ion
CALCIUM ION
2
CL
4
Ligand/Ion
CHLORIDE ION
3
EDO
10
Ligand/Ion
1,2-ETHANEDIOL
4
GOL
9
Ligand/Ion
GLYCEROL
5
PEG
2
Ligand/Ion
DI(HYDROXYETHYL)ETHER
6
PGE
1
Ligand/Ion
TRIETHYLENE GLYCOL
[
close Hetero Component info
]
Sites
(29, 29)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:27 , ASP A:29 , ASN A:32 , ASN A:33 , GLY A:51 , ASP A:53 , HOH A:839
BINDING SITE FOR RESIDUE CA A 701
02
AC2
SOFTWARE
ASN A:62 , ASP A:264 , GLU A:292 , GLU A:299 , HOH A:1085 , HOH A:1086
BINDING SITE FOR RESIDUE CA A 702
03
AC3
SOFTWARE
ASN A:139 , ILE A:190 , ASP A:199 , HIS A:233 , HOH A:1052 , HOH A:1053 , HOH A:1054
BINDING SITE FOR RESIDUE CA A 703
04
AC4
SOFTWARE
ASP A:264 , GLU A:289 , GLU A:292 , GLU A:299 , HOH A:852 , HOH A:857
BINDING SITE FOR RESIDUE CA A 704
05
AC5
SOFTWARE
GLY A:427
BINDING SITE FOR RESIDUE CL A 705
06
AC6
SOFTWARE
ALA A:495 , ARG A:521
BINDING SITE FOR RESIDUE CL A 706
07
AC7
SOFTWARE
ILE A:542
BINDING SITE FOR RESIDUE CL A 707
08
AC8
SOFTWARE
ILE A:190 , TYR A:191 , PHE A:236 , GLY A:237 , TYR A:627 , TYR A:639 , ASP A:640
BINDING SITE FOR RESIDUE GOL A 709
09
AC9
SOFTWARE
LYS A:212 , ASP A:216 , SER A:245 , HIS A:251 , HOH A:817 , HOH A:1257
BINDING SITE FOR RESIDUE GOL A 710
10
BC1
SOFTWARE
TYR A:100 , HIS A:140 , ASP A:229 , GOL A:716 , EDO A:720 , HOH A:1049
BINDING SITE FOR RESIDUE GOL A 711
11
BC2
SOFTWARE
GLU A:81 , GLN A:107 , THR A:108 , ASP A:110 , GLY A:447 , GOL A:713
BINDING SITE FOR RESIDUE GOL A 712
12
BC3
SOFTWARE
GLU A:81 , ASP A:104 , GLN A:107 , TYR A:158 , GLY A:161 , GOL A:712
BINDING SITE FOR RESIDUE GOL A 713
13
BC4
SOFTWARE
ASP A:145 , PHE A:151 , ASP A:196 , THR A:456 , HOH A:1230 , HOH A:1258
BINDING SITE FOR RESIDUE GOL A 714
14
BC5
SOFTWARE
THR A:67 , GLY A:70 , VAL A:71 , HIS A:128 , HOH A:1044
BINDING SITE FOR RESIDUE GOL A 715
15
BC6
SOFTWARE
LYS A:47 , HIS A:98 , TRP A:101 , ASP A:372 , ARG A:376 , GOL A:711 , EDO A:720 , HOH A:1038 , HOH A:1083
BINDING SITE FOR RESIDUE GOL A 716
16
BC7
SOFTWARE
ASP A:29 , ASP A:114 , ASP A:117 , HOH A:967 , HOH A:1027 , HOH A:1033
BINDING SITE FOR RESIDUE GOL A 717
17
BC8
SOFTWARE
GLN A:19 , SER A:77 , HIS A:98 , TYR A:100 , ASP A:135 , HOH A:1025
BINDING SITE FOR RESIDUE EDO A 718
18
BC9
SOFTWARE
LYS A:106 , SER A:213 , TRP A:663 , HOH A:1091 , HOH A:1171
BINDING SITE FOR RESIDUE EDO A 719
19
CC1
SOFTWARE
TYR A:89 , TRP A:101 , ASP A:196 , GOL A:711 , GOL A:716 , EDO A:727
BINDING SITE FOR RESIDUE EDO A 720
20
CC2
SOFTWARE
GLU A:276 , ASP A:316 , LYS A:561
BINDING SITE FOR RESIDUE EDO A 721
21
CC3
SOFTWARE
GLN A:334 , ALA A:336 , GLY A:337 , SER A:338 , HOH A:886 , HOH A:1213
BINDING SITE FOR RESIDUE EDO A 722
22
CC4
SOFTWARE
EDO A:724 , PEG A:729 , HOH A:1260
BINDING SITE FOR RESIDUE EDO A 723
23
CC5
SOFTWARE
GLN A:629 , TYR A:634 , EDO A:723
BINDING SITE FOR RESIDUE EDO A 724
24
CC6
SOFTWARE
THR A:300 , ASP A:303 , EDO A:726 , HOH A:861
BINDING SITE FOR RESIDUE EDO A 725
25
CC7
SOFTWARE
GLN A:55 , ILE A:58 , ASN A:120 , EDO A:725 , HOH A:847 , HOH A:950
BINDING SITE FOR RESIDUE EDO A 726
26
CC8
SOFTWARE
SER A:458 , EDO A:720 , HOH A:891
BINDING SITE FOR RESIDUE EDO A 727
27
CC9
SOFTWARE
GLU A:412 , ARG A:413 , TRP A:414 , VAL A:415
BINDING SITE FOR RESIDUE PEG A 728
28
DC1
SOFTWARE
THR A:599 , ASN A:600 , TYR A:601 , GLY A:602 , THR A:603 , ASN A:604 , TYR A:634 , EDO A:723 , HOH A:1260
BINDING SITE FOR RESIDUE PEG A 729
29
DC2
SOFTWARE
LYS A:302 , VAL A:415 , ASN A:416 , ASN A:417 , TYR A:443
BINDING SITE FOR RESIDUE PGE A 730
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 4)
Info
All SCOP Domains
1a: SCOP_d4jcla2 (A:408-497)
2a: SCOP_d4jcla3 (A:498-584)
3a: SCOP_d4jcla4 (A:585-687)
4a: SCOP_d4jcla1 (A:1-407)
View:
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Classes
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(
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Folds
(
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(
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Superfamilies
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(
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Families
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Glycosyl hydrolase domain
(397)
Superfamily
:
Glycosyl hydrolase domain
(397)
Family
:
automated matches
(85)
Protein domain
:
automated matches
(85)
Paenibacillus macerans [TaxId: 44252]
(1)
1a
d4jcla2
A:408-497
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
E set domains
(509)
Family
:
automated matches
(93)
Protein domain
:
automated matches
(93)
Paenibacillus macerans [TaxId: 44252]
(1)
2a
d4jcla3
A:498-584
Fold
:
Prealbumin-like
(433)
Superfamily
:
Starch-binding domain-like
(84)
Family
:
automated matches
(6)
Protein domain
:
automated matches
(6)
Paenibacillus macerans [TaxId: 44252]
(1)
3a
d4jcla4
A:585-687
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
automated matches
(180)
Protein domain
:
automated matches
(180)
Paenibacillus macerans [TaxId: 44252]
(1)
4a
d4jcla1
A:1-407
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
[
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Chain A
Asymmetric Unit 1
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