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Asym. Unit
Info
Asym.Unit (215 KB)
Biol.Unit 1 (107 KB)
Biol.Unit 2 (107 KB)
Biol.Unit 3 (209 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF LACTO-N-BIOSIDASE FROM BIFIDOBACTERIUM BIFIDUM COMPLEXED WITH LNB-THIAZOLINE
Authors
:
T. Ito, T. Katayama, K. A. Stubbs, S. Fushinobu
Date
:
19 Feb 13 (Deposition) - 20 Mar 13 (Release) - 10 Jul 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
Alpha/Beta-Domain, Tim Barrel, Beta-Trefoil, Hydrolase, Membrane- Anchored Extracellular
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Ito, T. Katayama, M. Hattie, H. Sakurama, J. Wada, R. Suzuki, H. Ashida, T. Wakagi, K. Yamamoto, K. A. Stubbs, S. Fushinobu
Crystal Structures Of A Glycoside Hydrolase Family 20 Lacto-N-Biosidase From Bifidobacterium Bifidum
J. Biol. Chem. V. 288 11795 2013
(for further references see the
PDB file header
)
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Hetero Components
(3, 11)
Info
All Hetero Components
1a: BETA-D-GALACTOSE (GALa)
1b: BETA-D-GALACTOSE (GALb)
2a: 3AR,5R,6S,7R,7AR-5-HYDROXYMETHYL-2... (NGTa)
2b: 3AR,5R,6S,7R,7AR-5-HYDROXYMETHYL-2... (NGTb)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GAL
2
Ligand/Ion
BETA-D-GALACTOSE
2
NGT
2
Ligand/Ion
3AR,5R,6S,7R,7AR-5-HYDROXYMETHYL-2-METHYL-5,6,7,7A-TETRAHYDRO-3AH-PYRANO[3,2-D]THIAZOLE-6,7-DIOL
3
SO4
7
Ligand/Ion
SULFATE ION
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN A:190 , GLU A:216 , ASN A:259 , HIS A:263 , ASP A:320 , PRO A:466 , ASP A:467 , NGT A:702 , HOH A:832 , HOH A:981
BINDING SITE FOR RESIDUE GAL A 701
02
AC2
SOFTWARE
ASP A:320 , GLU A:321 , TRP A:373 , TYR A:419 , TYR A:427 , TRP A:465 , ASP A:467 , GAL A:701
BINDING SITE FOR RESIDUE NGT A 702
03
AC3
SOFTWARE
SER A:423 , ALA A:424 , GLN A:425 , VAL A:426 , PHE A:471 , ARG A:599 , HOH A:950
BINDING SITE FOR RESIDUE SO4 A 703
04
AC4
SOFTWARE
THR A:146 , ASP A:147 , HOH A:927 , HOH A:928
BINDING SITE FOR RESIDUE SO4 A 704
05
AC5
SOFTWARE
TYR A:395 , ARG A:587
BINDING SITE FOR RESIDUE SO4 A 705
06
AC6
SOFTWARE
GLN A:190 , ASN A:265 , ASN A:286 , HOH A:842 , HOH A:932
BINDING SITE FOR RESIDUE SO4 A 706
07
AC7
SOFTWARE
GLN B:190 , GLU B:216 , ASN B:259 , HIS B:263 , ASP B:320 , PRO B:466 , ASP B:467 , NGT B:702 , HOH B:893 , HOH B:960
BINDING SITE FOR RESIDUE GAL B 701
08
AC8
SOFTWARE
ASP B:320 , GLU B:321 , TRP B:373 , TRP B:394 , TYR B:419 , TYR B:427 , TRP B:465 , ASP B:467 , GAL B:701
BINDING SITE FOR RESIDUE NGT B 702
09
AC9
SOFTWARE
SER B:423 , ALA B:424 , GLN B:425 , VAL B:426 , PHE B:471 , ARG B:599 , HOH B:939 , HOH B:945
BINDING SITE FOR RESIDUE SO4 B 703
10
BC1
SOFTWARE
TYR B:395 , ARG B:587
BINDING SITE FOR RESIDUE SO4 B 704
11
BC2
SOFTWARE
GLN B:190 , ASN B:265 , ASN B:286 , HOH B:899 , HOH B:900
BINDING SITE FOR RESIDUE SO4 B 705
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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Show PDB file:
Asym.Unit (215 KB)
Header - Asym.Unit
Biol.Unit 1 (107 KB)
Header - Biol.Unit 1
Biol.Unit 2 (107 KB)
Header - Biol.Unit 2
Biol.Unit 3 (209 KB)
Header - Biol.Unit 3
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