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4J99
Asym. Unit
Info
Asym.Unit (410 KB)
Biol.Unit 1 (101 KB)
Biol.Unit 2 (107 KB)
Biol.Unit 3 (105 KB)
Biol.Unit 4 (101 KB)
Biol.Unit 5 (204 KB)
Biol.Unit 6 (202 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF FGF RECEPTOR 2 (FGFR2) KINASE DOMAIN HARBORING THE GAIN-OF-FUNCTION K659T MUTATION.
Authors
:
H. Chen, M. Mohammadi
Date
:
15 Feb 13 (Deposition) - 07 Aug 13 (Release) - 28 Dec 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: A,B (1x)
Biol. Unit 6: C,D (1x)
Keywords
:
Bilobate Protein Kinase Fold, Receptor Tyrosine Kinase, Atp Binding, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Chen, Z. Huang, K. Dutta, S. Blais, T. A. Neubert, X. Li, D. Cowburn, N. J. Traaseth, M. Mohammadi
Cracking The Molecular Origin Of Intrinsic Tyrosine Kinase Activity Through Analysis Of Pathogenic Gain-Of-Function Mutations.
Cell Rep V. 4 376 2013
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Hetero Components
(3, 14)
Info
All Hetero Components
1a: PHOSPHOMETHYLPHOSPHONIC ACID ADENY... (ACPa)
1b: PHOSPHOMETHYLPHOSPHONIC ACID ADENY... (ACPb)
1c: PHOSPHOMETHYLPHOSPHONIC ACID ADENY... (ACPc)
1d: PHOSPHOMETHYLPHOSPHONIC ACID ADENY... (ACPd)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ACP
4
Ligand/Ion
PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
2
MG
3
Ligand/Ion
MAGNESIUM ION
3
SO4
7
Ligand/Ion
SULFATE ION
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:625 , ARG A:649 , TYR A:657 , THR A:659
BINDING SITE FOR RESIDUE SO4 A 801
02
AC2
SOFTWARE
GLY A:488 , GLY A:490 , ALA A:491 , VAL A:495 , ALA A:515 , LYS A:517 , VAL A:564 , GLU A:565 , ALA A:567 , ASP A:626 , ARG A:630 , ASN A:631 , LEU A:633 , ASP A:644 , HOH A:967 , HOH A:968 , HOH A:970 , HOH A:972
BINDING SITE FOR RESIDUE ACP A 802
03
AC3
SOFTWARE
THR A:635 , GLU A:636 , ASN A:637 , VAL A:639
BINDING SITE FOR RESIDUE SO4 A 803
04
AC4
SOFTWARE
ARG B:625 , ARG B:649 , TYR B:657 , THR B:659 , THR B:660 , HOH B:932
BINDING SITE FOR RESIDUE SO4 B 801
05
AC5
SOFTWARE
GLY B:488 , GLY B:490 , ALA B:491 , VAL B:495 , ALA B:515 , VAL B:564 , GLU B:565 , ALA B:567 , ASN B:571 , ASP B:626 , ASN B:631 , LEU B:633 , ASP B:644 , HOH B:930 , HOH B:1013
BINDING SITE FOR RESIDUE ACP B 802
06
AC6
SOFTWARE
THR A:729 , ASN A:730 , GLU A:731 , ARG B:478 , HOH B:931 , HOH B:992
BINDING SITE FOR RESIDUE SO4 B 803
07
AC7
SOFTWARE
ARG C:625 , ARG C:649 , TYR C:657 , THR C:659 , THR C:660 , HOH C:922
BINDING SITE FOR RESIDUE SO4 C 801
08
AC8
SOFTWARE
LEU C:487 , GLY C:488 , PHE C:492 , VAL C:495 , ALA C:515 , LYS C:517 , GLU C:565 , ALA C:567 , ASN C:631 , LEU C:633 , ASP C:644 , MG C:803 , HOH C:959 , HOH C:985
BINDING SITE FOR RESIDUE ACP C 802
09
AC9
SOFTWARE
ASN C:631 , ASP C:644 , ACP C:802
BINDING SITE FOR RESIDUE MG C 803
10
BC1
SOFTWARE
THR C:635 , ASN C:637 , VAL C:639
BINDING SITE FOR RESIDUE SO4 C 804
11
BC2
SOFTWARE
ARG D:625 , ARG D:649 , TYR D:657 , THR D:659 , HOH D:962
BINDING SITE FOR RESIDUE SO4 D 801
12
BC3
SOFTWARE
GLY D:490 , ALA D:491 , PHE D:492 , ALA D:515 , LYS D:517 , VAL D:564 , GLU D:565 , ALA D:567 , ASN D:571 , ARG D:630 , ASN D:631 , LEU D:633 , ASP D:644 , MG D:803 , MG D:804 , HOH D:945 , HOH D:970
BINDING SITE FOR RESIDUE ACP D 802
13
BC4
SOFTWARE
ASN D:631 , ASP D:644 , ACP D:802
BINDING SITE FOR RESIDUE MG D 803
14
BC5
SOFTWARE
LYS D:517 , GLU D:534 , ASP D:644 , GLY D:646 , ACP D:802
BINDING SITE FOR RESIDUE MG D 804
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4j99a_ (A:)
1b: SCOP_d4j99b_ (B:)
1c: SCOP_d4j99c_ (C:)
1d: SCOP_d4j99d_ (D:)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
Fibroblast growth factor receptor 2
(16)
Human (Homo sapiens) [TaxId: 9606]
(16)
1a
d4j99a_
A:
1b
d4j99b_
B:
1c
d4j99c_
C:
1d
d4j99d_
D:
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (410 KB)
Header - Asym.Unit
Biol.Unit 1 (101 KB)
Header - Biol.Unit 1
Biol.Unit 2 (107 KB)
Header - Biol.Unit 2
Biol.Unit 3 (105 KB)
Header - Biol.Unit 3
Biol.Unit 4 (101 KB)
Header - Biol.Unit 4
Biol.Unit 5 (204 KB)
Header - Biol.Unit 5
Biol.Unit 6 (202 KB)
Header - Biol.Unit 6
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