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4J8A
Asym. Unit
Info
Asym.Unit (101 KB)
Biol.Unit 1 (94 KB)
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(1)
Title
:
IRRADIATED-STATE STRUCTURE OF SFGFP CONTAINING THE UNNATURAL AMINO ACID P-AZIDO-PHENYLALANINE AT RESIDUE 145
Authors
:
S. C. Reddington, D. D. Jones, P. J. Rizkallah, E. M. Tippmann
Date
:
14 Feb 13 (Deposition) - 15 May 13 (Release) - 26 Jun 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.26
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Beta-Barrel, Fluorescent Protein, Chromophore By Cyclisation, P- Azido-L-Phenylalanine, Cytosol
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. C. Reddington, P. J. Rizkallah, P. D. Watson, R. Pearson, E. M. Tippmann, D. D. Jones
Different Photochemical Events Of A Genetically Encoded Phenyl Azide Define And Modulate Gfp Fluorescence.
Angew. Chem. Int. Ed. Engl. V. 52 5974 2013
[
close entry info
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Hetero Components
(5, 39)
Info
All Hetero Components
1a: {2-[(1R,2R)-1-AMINO-2-HYDROXYPROPY... (CROa)
2a: 1,2-ETHANEDIOL (EDOa)
2aa: 1,2-ETHANEDIOL (EDOaa)
2ab: 1,2-ETHANEDIOL (EDOab)
2ac: 1,2-ETHANEDIOL (EDOac)
2ad: 1,2-ETHANEDIOL (EDOad)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
2p: 1,2-ETHANEDIOL (EDOp)
2q: 1,2-ETHANEDIOL (EDOq)
2r: 1,2-ETHANEDIOL (EDOr)
2s: 1,2-ETHANEDIOL (EDOs)
2t: 1,2-ETHANEDIOL (EDOt)
2u: 1,2-ETHANEDIOL (EDOu)
2v: 1,2-ETHANEDIOL (EDOv)
2w: 1,2-ETHANEDIOL (EDOw)
2x: 1,2-ETHANEDIOL (EDOx)
2y: 1,2-ETHANEDIOL (EDOy)
2z: 1,2-ETHANEDIOL (EDOz)
3a: 4-AMINO-L-PHENYLALANINE (HOXa)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
5a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CRO
1
Mod. Amino Acid
{2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID
2
EDO
30
Ligand/Ion
1,2-ETHANEDIOL
3
HOX
1
Mod. Amino Acid
4-AMINO-L-PHENYLALANINE
4
SO4
6
Ligand/Ion
SULFATE ION
5
TRS
1
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
[
close Hetero Component info
]
Sites
(37, 37)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PRO A:56 , TRP A:57 , PRO A:58 , HIS A:139 , GLN A:157 , EDO A:310 , HOH A:417 , HOH A:422 , HOH A:455 , HOH A:464
BINDING SITE FOR RESIDUE SO4 A 301
02
AC2
SOFTWARE
LYS A:101 , ASP A:102 , ASP A:103 , EDO A:333 , EDO A:335 , HOH A:420 , HOH A:475 , HOH A:550
BINDING SITE FOR RESIDUE SO4 A 302
03
AC3
SOFTWARE
LYS A:107 , LYS A:126 , ASN A:146 , SER A:147 , GLN A:204 , SER A:205 , HOH A:453 , HOH A:554 , HOH A:639
BINDING SITE FOR RESIDUE SO4 A 303
04
AC4
SOFTWARE
GLU A:17 , ARG A:30 , ARG A:122 , HOH A:493 , HOH A:645
BINDING SITE FOR RESIDUE SO4 A 304
05
AC5
SOFTWARE
ASP A:19 , GLY A:20 , ASP A:21 , GLU A:124 , LEU A:125 , HOH A:639
BINDING SITE FOR RESIDUE SO4 A 305
06
AC6
SOFTWARE
LYS A:107 , ARG A:109 , GLU A:124 , HOH A:639 , HOH A:640
BINDING SITE FOR RESIDUE EDO A 306
07
AC7
SOFTWARE
ARG A:109 , GLU A:111 , ARG A:122 , GLU A:124
BINDING SITE FOR RESIDUE EDO A 307
08
AC8
SOFTWARE
GLU A:95 , THR A:97 , TYR A:143 , TYR A:182 , GLN A:184 , SER A:208 , LYS A:209 , HOH A:515
BINDING SITE FOR RESIDUE EDO A 308
09
AC9
SOFTWARE
HIS A:77 , ALA A:227 , GLY A:228 , ILE A:229 , HOH A:543 , HOH A:592
BINDING SITE FOR RESIDUE EDO A 309
10
BC1
SOFTWARE
TYR A:143 , GLN A:157 , LYS A:158 , GLN A:184 , LYS A:209 , SO4 A:301 , HOH A:455 , HOH A:473
BINDING SITE FOR RESIDUE EDO A 310
11
BC2
SOFTWARE
PHE A:165 , LYS A:166 , HOH A:630 , HOH A:652
BINDING SITE FOR RESIDUE EDO A 311
12
BC3
SOFTWARE
LYS A:166 , ARG A:168 , LEU A:178 , HOH A:501 , HOH A:520 , HOH A:537
BINDING SITE FOR RESIDUE EDO A 312
13
BC4
SOFTWARE
LYS A:131 , GLU A:132 , EDO A:332
BINDING SITE FOR RESIDUE EDO A 313
14
BC5
SOFTWARE
GLU A:34 , ASP A:36 , LYS A:41 , THR A:43 , HOH A:557 , HOH A:569
BINDING SITE FOR RESIDUE EDO A 314
15
BC6
SOFTWARE
ASN A:39 , PHE A:223 , HOH A:548 , HOH A:552
BINDING SITE FOR RESIDUE EDO A 315
16
BC7
SOFTWARE
HIS A:25 , HOH A:503
BINDING SITE FOR RESIDUE EDO A 316
17
BC8
SOFTWARE
THR A:118 , ASN A:159 , ASP A:190 , EDO A:326 , HOH A:617
BINDING SITE FOR RESIDUE EDO A 317
18
BC9
SOFTWARE
LEU A:44 , LYS A:45 , EDO A:327 , EDO A:333 , HOH A:447 , HOH A:541
BINDING SITE FOR RESIDUE EDO A 318
19
CC1
SOFTWARE
ARG A:30 , LYS A:45 , EDO A:320
BINDING SITE FOR RESIDUE EDO A 319
20
CC2
SOFTWARE
ARG A:215 , THR A:230 , EDO A:319
BINDING SITE FOR RESIDUE EDO A 320
21
CC3
SOFTWARE
GLU A:172 , PRO A:187 , ILE A:188 , GLY A:189 , ASP A:190 , HOH A:584 , HOH A:621
BINDING SITE FOR RESIDUE EDO A 321
22
CC4
SOFTWARE
ARG A:80 , GLU A:90 , ILE A:188 , EDO A:323 , HOH A:523 , HOH A:588
BINDING SITE FOR RESIDUE EDO A 322
23
CC5
SOFTWARE
ARG A:80 , HIS A:81 , GLU A:90 , ILE A:229 , EDO A:322 , HOH A:564
BINDING SITE FOR RESIDUE EDO A 323
24
CC6
SOFTWARE
SER A:99 , THR A:105 , EDO A:333 , HOH A:412 , HOH A:447 , HOH A:461 , HOH A:600 , HOH A:601
BINDING SITE FOR RESIDUE EDO A 324
25
CC7
SOFTWARE
GLU A:5 , LYS A:79 , LYS A:113 , GLU A:115 , HOH A:581
BINDING SITE FOR RESIDUE EDO A 325
26
CC8
SOFTWARE
GLU A:115 , GLY A:116 , ASP A:117 , THR A:118 , ASN A:159 , PRO A:192 , VAL A:193 , EDO A:317
BINDING SITE FOR RESIDUE EDO A 326
27
CC9
SOFTWARE
SER A:208 , LYS A:209 , ASP A:210 , EDO A:318 , HOH A:600
BINDING SITE FOR RESIDUE EDO A 327
28
DC1
SOFTWARE
ASN A:149 , TYR A:200 , SER A:202
BINDING SITE FOR RESIDUE EDO A 328
29
DC2
SOFTWARE
THR A:49 , GLY A:228 , ILE A:229 , HOH A:562 , HOH A:565
BINDING SITE FOR RESIDUE EDO A 329
30
DC3
SOFTWARE
LYS A:101 , ASP A:102 , ASP A:103 , GLY A:134 , ASN A:135 , GLN A:177 , HOH A:602
BINDING SITE FOR RESIDUE EDO A 330
31
DC4
SOFTWARE
PRO A:58 , THR A:59 , VAL A:61 , THR A:62 , PHE A:100 , HOX A:145 , HIS A:169 , ALA A:179 , HIS A:181
BINDING SITE FOR RESIDUE EDO A 331
32
DC5
SOFTWARE
LYS A:131 , ASP A:133 , GLY A:134 , EDO A:313
BINDING SITE FOR RESIDUE EDO A 332
33
DC6
SOFTWARE
SO4 A:302 , EDO A:318 , EDO A:324 , HOH A:600
BINDING SITE FOR RESIDUE EDO A 333
34
DC7
SOFTWARE
ARG A:80 , PHE A:114 , GLY A:116 , LEU A:195 , HOH A:631
BINDING SITE FOR RESIDUE EDO A 334
35
DC8
SOFTWARE
SER A:99 , LYS A:101 , ASP A:180 , SO4 A:302 , HOH A:521 , HOH A:622
BINDING SITE FOR RESIDUE EDO A 335
36
DC9
SOFTWARE
ARG A:73 , PRO A:75 , ASP A:76 , HIS A:77 , HOH A:619
BINDING SITE FOR RESIDUE TRS A 336
37
EC1
SOFTWARE
ASN A:146 , HIS A:148 , ARG A:168 , HOH A:655 , HOH A:656 , HOH A:659
BINDING SITE FOR RESIDUE SO4 A 337
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d4j8aa_ (A:)
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Folds
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
GFP-like
(339)
Superfamily
:
GFP-like
(339)
Family
:
Fluorescent proteins
(271)
Protein domain
:
Green fluorescent protein, GFP
(161)
Jellyfish (Aequorea victoria) [TaxId: 6100]
(158)
1a
d4j8aa_
A:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
[
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Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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