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4J89
Asym. Unit
Info
Asym.Unit (169 KB)
Biol.Unit 1 (83 KB)
Biol.Unit 2 (82 KB)
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(1)
Title
:
DIFFERENT PHOTOCHEMICAL EVENTS OF A GENETICALLY ENCODED ARYL AZIDE DEFINE AND MODULATE GFP FLUORESCENCE
Authors
:
S. C. Reddington, D. D. Jones, P. J. Rizkallah, E. M. Tippmann
Date
:
14 Feb 13 (Deposition) - 26 Jun 13 (Release) - 26 Jun 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Beta-Barrel, Fluorescent Protein, Chromophore By Cyclisation, P- Azido-L-Phenylalanine, Cytosol
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. C. Reddington, P. J. Rizkallah, P. D. Watson, R. Pearson, E. M. Tippmann, D. D. Jones
Different Photochemical Events Of A Genetically Encoded Phenyl Azide Define And Modulate Gfp Fluorescence.
Angew. Chem. Int. Ed. Engl. V. 52 5974 2013
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Hetero Components
(4, 31)
Info
All Hetero Components
1a: {(4Z)-4-(4-AMINOBENZYLIDENE)-2-[(1... (CQ2a)
1b: {(4Z)-4-(4-AMINOBENZYLIDENE)-2-[(1... (CQ2b)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
2p: 1,2-ETHANEDIOL (EDOp)
2q: 1,2-ETHANEDIOL (EDOq)
2r: 1,2-ETHANEDIOL (EDOr)
2s: 1,2-ETHANEDIOL (EDOs)
2t: 1,2-ETHANEDIOL (EDOt)
2u: 1,2-ETHANEDIOL (EDOu)
2v: 1,2-ETHANEDIOL (EDOv)
2w: 1,2-ETHANEDIOL (EDOw)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
4a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CQ2
2
Mod. Amino Acid
{(4Z)-4-(4-AMINOBENZYLIDENE)-2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID
2
EDO
23
Ligand/Ion
1,2-ETHANEDIOL
3
SO4
5
Ligand/Ion
SULFATE ION
4
TRS
1
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
[
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Sites
(29, 29)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:80 , GLY A:116 , ASP A:117 , THR A:118 , HOH A:476
BINDING SITE FOR RESIDUE SO4 A 301
02
AC2
SOFTWARE
VAL A:55 , PRO A:56 , TRP A:57 , PRO A:58 , HIS A:139 , HOH A:417 , HOH A:429 , HOH A:513 , HOH A:521 , HOH A:539
BINDING SITE FOR RESIDUE SO4 A 302
03
AC3
SOFTWARE
ARG A:73 , PRO A:75 , ASP A:76 , HIS A:77 , ASN B:149 , TYR B:151
BINDING SITE FOR RESIDUE TRS A 303
04
AC4
SOFTWARE
GLU A:95 , ARG A:109 , HOH A:558 , LYS B:3
BINDING SITE FOR RESIDUE EDO A 304
05
AC5
SOFTWARE
GLU A:124 , LEU B:194
BINDING SITE FOR RESIDUE EDO A 305
06
AC6
SOFTWARE
ARG A:109 , GLU A:124
BINDING SITE FOR RESIDUE EDO A 306
07
AC7
SOFTWARE
ARG A:30 , HOH A:455 , HOH A:541
BINDING SITE FOR RESIDUE EDO A 307
08
AC8
SOFTWARE
TYR A:143 , SER A:208 , LYS A:209
BINDING SITE FOR RESIDUE EDO A 308
09
AC9
SOFTWARE
TYR A:143 , ASN A:144 , SER A:205 , VAL A:206 , LEU A:207 , EDO A:314 , HOH A:477
BINDING SITE FOR RESIDUE EDO A 309
10
BC1
SOFTWARE
GLU A:90 , LYS A:113 , ILE A:188 , HOH A:548
BINDING SITE FOR RESIDUE EDO A 310
11
BC2
SOFTWARE
GLU A:132
BINDING SITE FOR RESIDUE EDO A 311
12
BC3
SOFTWARE
ASN A:149 , TYR A:151 , HOH A:544 , PRO B:75 , ASP B:76
BINDING SITE FOR RESIDUE EDO A 312
13
BC4
SOFTWARE
ASP A:102 , ASP A:103
BINDING SITE FOR RESIDUE EDO A 313
14
BC5
SOFTWARE
ASN A:144 , EDO A:309
BINDING SITE FOR RESIDUE EDO A 314
15
BC6
SOFTWARE
ASP A:190 , HOH A:424 , PRO B:56 , TRP B:57 , PRO B:58 , HIS B:139 , HOH B:409 , HOH B:467 , HOH B:516
BINDING SITE FOR RESIDUE EDO A 315
16
BC7
SOFTWARE
HIS A:148 , PHE A:165 , LYS A:166 , ARG A:168
BINDING SITE FOR RESIDUE EDO A 316
17
BC8
SOFTWARE
LYS B:101 , ASP B:102 , ASP B:103
BINDING SITE FOR RESIDUE SO4 B 301
18
BC9
SOFTWARE
HIS B:148 , PHE B:165 , LYS B:166 , HOH B:502 , HOH B:520
BINDING SITE FOR RESIDUE SO4 B 302
19
CC1
SOFTWARE
LYS A:41 , ASN B:144 , PHE B:145 , SER B:205 , VAL B:206 , LEU B:207 , HOH B:519
BINDING SITE FOR RESIDUE SO4 B 303
20
CC2
SOFTWARE
LYS A:107 , LYS A:126 , HOH A:482 , LEU B:194 , LEU B:195 , EDO B:313
BINDING SITE FOR RESIDUE EDO B 304
21
CC3
SOFTWARE
PRO A:89 , GLU A:90 , TYR B:143 , SER B:208 , LYS B:209 , HOH B:431
BINDING SITE FOR RESIDUE EDO B 305
22
CC4
SOFTWARE
GLU B:17 , VAL B:29 , ARG B:30
BINDING SITE FOR RESIDUE EDO B 306
23
CC5
SOFTWARE
SER B:208 , LYS B:209
BINDING SITE FOR RESIDUE EDO B 307
24
CC6
SOFTWARE
TYR A:200 , GLY A:228 , ILE A:229 , HIS B:77 , ALA B:227 , GLY B:228 , ILE B:229 , HOH B:417
BINDING SITE FOR RESIDUE EDO B 308
25
CC7
SOFTWARE
ASN B:164 , HOH B:440
BINDING SITE FOR RESIDUE EDO B 309
26
CC8
SOFTWARE
GLU B:34 , ASP B:36 , LYS B:41 , LEU B:42 , THR B:43
BINDING SITE FOR RESIDUE EDO B 310
27
CC9
SOFTWARE
TYR B:151 , ILE B:152 , ASN B:198 , HIS B:199 , GLY B:228 , HOH B:509
BINDING SITE FOR RESIDUE EDO B 311
28
DC1
SOFTWARE
LYS B:166
BINDING SITE FOR RESIDUE EDO B 312
29
DC2
SOFTWARE
ARG B:80 , LEU B:194 , LEU B:195 , EDO B:304
BINDING SITE FOR RESIDUE EDO B 313
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d4j89a_ (A:)
1b: SCOP_d4j89b_ (B:)
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Classes
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
GFP-like
(339)
Superfamily
:
GFP-like
(339)
Family
:
Fluorescent proteins
(271)
Protein domain
:
Green fluorescent protein, GFP
(161)
Jellyfish (Aequorea victoria) [TaxId: 6100]
(158)
1a
d4j89a_
A:
1b
d4j89b_
B:
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
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Sorry, no Info available
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Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (169 KB)
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