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4J88
Asym. Unit
Info
Asym.Unit (170 KB)
Biol.Unit 1 (85 KB)
Biol.Unit 2 (80 KB)
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(1)
Title
:
DARK-STATE STRUCTURE OF SFGFP CONTAINING THE UNNATURAL AMINO ACID P-AZIDO-PHENYLALANINE AT RESIDUE 66
Authors
:
S. C. Reddington, D. D. Jones, P. J. Rizkallah, E. M. Tippmann
Date
:
14 Feb 13 (Deposition) - 26 Jun 13 (Release) - 26 Jun 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.08
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Beta-Barrel, Fluorescent Protein, Chromophore By Cyclisation, P- Azido-L-Phenylalanine, Cytosol
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. C. Reddington, P. J. Rizkallah, P. D. Watson, R. Pearson, E. M. Tippmann, D. D. Jones
Different Photochemical Events Of A Genetically Encoded Phenyl Azide Define And Modulate Gfp Fluorescence.
Angew. Chem. Int. Ed. Engl. V. 52 5974 2013
[
close entry info
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Hetero Components
(4, 38)
Info
All Hetero Components
1a: [(4Z)-2-[(1R,2R)-1-AMINO-2-HYDROXY... (CQ1a)
1b: [(4Z)-2-[(1R,2R)-1-AMINO-2-HYDROXY... (CQ1b)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
2p: 1,2-ETHANEDIOL (EDOp)
2q: 1,2-ETHANEDIOL (EDOq)
2r: 1,2-ETHANEDIOL (EDOr)
2s: 1,2-ETHANEDIOL (EDOs)
2t: 1,2-ETHANEDIOL (EDOt)
2u: 1,2-ETHANEDIOL (EDOu)
2v: 1,2-ETHANEDIOL (EDOv)
2w: 1,2-ETHANEDIOL (EDOw)
2x: 1,2-ETHANEDIOL (EDOx)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
4a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
4b: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSb)
4c: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CQ1
2
Mod. Amino Acid
[(4Z)-2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4-AZIDOBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETIC ACID
2
EDO
24
Ligand/Ion
1,2-ETHANEDIOL
3
SO4
9
Ligand/Ion
SULFATE ION
4
TRS
3
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
[
close Hetero Component info
]
Sites
(36, 36)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
VAL A:55 , PRO A:56 , TRP A:57 , PRO A:58 , HIS A:139 , HOH A:411 , HOH A:415 , HOH A:424 , HOH A:438 , HOH A:497 , HOH A:552
BINDING SITE FOR RESIDUE SO4 A 301
02
AC2
SOFTWARE
HIS A:148 , ASN A:149 , TYR A:151 , ARG A:168 , ARG B:73
BINDING SITE FOR RESIDUE SO4 A 302
03
AC3
SOFTWARE
ASN A:164 , PHE A:165 , LYS A:166 , ASP A:180 , HIS A:181 , HOH A:457
BINDING SITE FOR RESIDUE SO4 A 303
04
AC4
SOFTWARE
ASP A:19 , GLY A:20 , ASP A:21 , GLU A:124 , LEU A:125 , LYS A:126
BINDING SITE FOR RESIDUE SO4 A 304
05
AC5
SOFTWARE
GLU A:6 , THR A:9 , ARG A:30 , GLU A:32 , LYS A:45 , ILE A:47 , HOH A:559
BINDING SITE FOR RESIDUE EDO A 305
06
AC6
SOFTWARE
PRO A:13 , ILE A:14 , LEU A:15 , GLU A:32 , GLY A:33
BINDING SITE FOR RESIDUE EDO A 306
07
AC7
SOFTWARE
VAL A:11 , ARG A:80 , HOH A:560
BINDING SITE FOR RESIDUE EDO A 307
08
AC8
SOFTWARE
GLU A:34 , THR A:43 , HOH A:483 , HOH A:576 , SO4 B:301
BINDING SITE FOR RESIDUE EDO A 308
09
AC9
SOFTWARE
PRO A:89 , EDO A:313 , HOH A:421 , HOH A:510 , HOH A:567 , HOH A:587 , PRO B:211 , HOH B:450
BINDING SITE FOR RESIDUE EDO A 309
10
BC1
SOFTWARE
ASN A:144 , EDO A:311 , HOH A:482
BINDING SITE FOR RESIDUE EDO A 310
11
BC2
SOFTWARE
GLU A:142 , TYR A:143 , ASN A:144 , EDO A:310
BINDING SITE FOR RESIDUE EDO A 311
12
BC3
SOFTWARE
PRO A:89 , GLU A:90 , LYS A:113 , PHE A:114 , HOH A:484 , LYS B:209 , PRO B:211 , HOH B:450
BINDING SITE FOR RESIDUE EDO A 312
13
BC4
SOFTWARE
LYS A:3 , LEU A:7 , EDO A:309 , HOH A:510 , HOH A:528 , HOH A:571
BINDING SITE FOR RESIDUE EDO A 313
14
BC5
SOFTWARE
SER A:208 , LYS A:209 , PRO A:211 , HOH A:522
BINDING SITE FOR RESIDUE EDO A 314
15
BC6
SOFTWARE
HOH A:573
BINDING SITE FOR RESIDUE EDO A 315
16
BC7
SOFTWARE
GLU A:17 , ASP A:19 , ILE A:123
BINDING SITE FOR RESIDUE EDO A 316
17
BC8
SOFTWARE
ARG A:109 , ARG A:122 , GLU A:124
BINDING SITE FOR RESIDUE EDO A 317
18
BC9
SOFTWARE
HIS A:25 , LYS A:26 , HOH A:488
BINDING SITE FOR RESIDUE EDO A 318
19
CC1
SOFTWARE
LYS A:107 , ARG A:109 , GLU A:124 , HOH A:549 , HOH A:580 , LEU B:194
BINDING SITE FOR RESIDUE EDO A 319
20
CC2
SOFTWARE
ALA A:154 , LEU A:195 , ASP A:197
BINDING SITE FOR RESIDUE EDO A 320
21
CC3
SOFTWARE
HOH A:550 , LYS B:209 , GLU B:213 , ARG B:215 , ASP B:216 , HIS B:217
BINDING SITE FOR RESIDUE EDO A 321
22
CC4
SOFTWARE
ALA A:163 , TYR A:182 , GLN A:183 , GLN A:184 , GLY B:191
BINDING SITE FOR RESIDUE EDO A 322
23
CC5
SOFTWARE
GLU A:132
BINDING SITE FOR RESIDUE EDO A 323
24
CC6
SOFTWARE
ARG A:73 , PRO A:75 , ASP A:76 , HIS A:77 , ASN B:149 , TYR B:151
BINDING SITE FOR RESIDUE TRS A 324
25
CC7
SOFTWARE
ARG A:80 , GLU A:115 , GLY A:116 , ASP A:117 , THR A:118 , HOH A:562 , HOH A:584 , HOH B:485
BINDING SITE FOR RESIDUE TRS A 325
26
CC8
SOFTWARE
SER A:99 , PHE A:100 , LYS A:101 , ASP A:102 , ASP A:103 , HOH A:417
BINDING SITE FOR RESIDUE TRS A 326
27
CC9
SOFTWARE
LYS A:41 , EDO A:308 , ASN B:144 , PHE B:145 , VAL B:206 , LEU B:207 , HOH B:502
BINDING SITE FOR RESIDUE SO4 B 301
28
DC1
SOFTWARE
PHE B:100 , LYS B:101 , ASP B:102 , ASP B:103 , HOH B:444
BINDING SITE FOR RESIDUE SO4 B 302
29
DC2
SOFTWARE
LYS B:107 , THR B:108 , ARG B:109 , GLU B:124 , LYS B:126
BINDING SITE FOR RESIDUE SO4 B 303
30
DC3
SOFTWARE
HIS B:148 , ASN B:149 , PHE B:165 , LYS B:166
BINDING SITE FOR RESIDUE SO4 B 304
31
DC4
SOFTWARE
GLU B:95 , ARG B:96 , THR B:97 , TYR B:182 , GLN B:183 , GLN B:184 , HOH B:524
BINDING SITE FOR RESIDUE SO4 B 305
32
DC5
SOFTWARE
ARG B:30 , GLU B:32 , LYS B:45 , ILE B:47 , HOH B:402
BINDING SITE FOR RESIDUE EDO B 306
33
DC6
SOFTWARE
GLU B:17 , ILE B:123 , EDO B:308
BINDING SITE FOR RESIDUE EDO B 307
34
DC7
SOFTWARE
ARG B:109 , ARG B:122 , GLU B:124 , EDO B:307
BINDING SITE FOR RESIDUE EDO B 308
35
DC8
SOFTWARE
TYR A:151 , ASP B:76
BINDING SITE FOR RESIDUE EDO B 309
36
DC9
SOFTWARE
HIS B:25
BINDING SITE FOR RESIDUE EDO B 310
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d4j88a_ (A:)
1b: SCOP_d4j88b_ (B:)
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Protein Domains
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Organisms
(
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(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
GFP-like
(339)
Superfamily
:
GFP-like
(339)
Family
:
Fluorescent proteins
(271)
Protein domain
:
Green fluorescent protein, GFP
(161)
Jellyfish (Aequorea victoria) [TaxId: 6100]
(158)
1a
d4j88a_
A:
1b
d4j88b_
B:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
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Sorry, no Info available
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