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4J7U
Asym. Unit
Info
Asym.Unit (174 KB)
Biol.Unit 1 (86 KB)
Biol.Unit 2 (85 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN SEPIAPTERIN REDUCTASE IN COMPLEX WITH SULFATHIAZOLE
Authors
:
M. Groenlund Pedersen, F. Pojer, K. Johnsson
Date
:
14 Feb 13 (Deposition) - 05 Jun 13 (Release) - 05 Jun 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.44
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Reductase, Oxidoreductase-Antibiotic Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Haruki, M. G. Pedersen, K. I. Gorska, F. Pojer, K. Johnsson
Tetrahydrobiopterin Biosynthesis As An Off-Target Of Sulfa Drugs.
Science V. 340 987 2013
[
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Hetero Components
(5, 20)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
2a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
2b: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPb)
2c: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPc)
2d: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPd)
3a: DI(HYDROXYETHYL)ETHER (PEGa)
3b: DI(HYDROXYETHYL)ETHER (PEGb)
3c: DI(HYDROXYETHYL)ETHER (PEGc)
3d: DI(HYDROXYETHYL)ETHER (PEGd)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
5a: 4-AMINO-N-(1,3-THIAZOL-2-YL)BENZEN... (YTZa)
5b: 4-AMINO-N-(1,3-THIAZOL-2-YL)BENZEN... (YTZb)
5c: 4-AMINO-N-(1,3-THIAZOL-2-YL)BENZEN... (YTZc)
5d: 4-AMINO-N-(1,3-THIAZOL-2-YL)BENZEN... (YTZd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
2
Ligand/Ion
GLYCEROL
2
NAP
4
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
3
PEG
4
Ligand/Ion
DI(HYDROXYETHYL)ETHER
4
SO4
6
Ligand/Ion
SULFATE ION
5
YTZ
4
Ligand/Ion
4-AMINO-N-(1,3-THIAZOL-2-YL)BENZENESULFONAMIDE
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Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:11 , SER A:13 , ARG A:14 , GLY A:15 , PHE A:16 , ALA A:38 , ARG A:39 , ASN A:40 , ALA A:65 , ASP A:66 , LEU A:67 , ASN A:97 , LEU A:123 , ILE A:152 , SER A:153 , TYR A:167 , LYS A:171 , PRO A:195 , GLY A:196 , PRO A:197 , LEU A:198 , THR A:200 , MET A:202 , GLN A:203 , YTZ A:802 , HOH A:907 , HOH A:918 , HOH A:919 , HOH A:921
BINDING SITE FOR RESIDUE NAP A 801
02
AC2
SOFTWARE
SER A:154 , LEU A:155 , PHE A:161 , TYR A:167 , GLY A:196 , PRO A:197 , GLN A:203 , NAP A:801 , PEG A:806 , HOH A:905
BINDING SITE FOR RESIDUE YTZ A 802
03
AC3
SOFTWARE
ARG A:39
BINDING SITE FOR RESIDUE SO4 A 803
04
AC4
SOFTWARE
ARG A:59 , ARG D:45
BINDING SITE FOR RESIDUE SO4 A 804
05
AC5
SOFTWARE
ASP A:254 , PEG A:806 , HOH A:943
BINDING SITE FOR RESIDUE PEG A 805
06
AC6
SOFTWARE
GLY A:218 , YTZ A:802 , PEG A:805 , HOH A:943
BINDING SITE FOR RESIDUE PEG A 806
07
AC7
SOFTWARE
GLY B:11 , SER B:13 , ARG B:14 , GLY B:15 , PHE B:16 , ARG B:39 , ASN B:40 , ALA B:65 , ASP B:66 , LEU B:67 , ASN B:97 , ALA B:98 , ILE B:152 , SER B:153 , TYR B:167 , LYS B:171 , PRO B:195 , GLY B:196 , PRO B:197 , LEU B:198 , THR B:200 , MET B:202 , GLN B:203 , YTZ B:802 , HOH B:906 , HOH B:918
BINDING SITE FOR RESIDUE NAP B 801
08
AC8
SOFTWARE
SER B:154 , LEU B:155 , PHE B:161 , TRP B:164 , TYR B:167 , GLY B:196 , PRO B:197 , GLN B:203 , NAP B:801 , GOL B:805 , HOH B:901
BINDING SITE FOR RESIDUE YTZ B 802
09
AC9
SOFTWARE
ARG B:39
BINDING SITE FOR RESIDUE SO4 B 803
10
BC1
SOFTWARE
ASP B:214 , GOL B:805
BINDING SITE FOR RESIDUE PEG B 804
11
BC2
SOFTWARE
ASP B:254 , YTZ B:802 , PEG B:804
BINDING SITE FOR RESIDUE GOL B 805
12
BC3
SOFTWARE
GLY C:11 , SER C:13 , ARG C:14 , GLY C:15 , PHE C:16 , ARG C:39 , ASN C:40 , ALA C:65 , ASP C:66 , LEU C:67 , ASN C:97 , ALA C:98 , LEU C:123 , ILE C:152 , SER C:153 , TYR C:167 , LYS C:171 , PRO C:195 , GLY C:196 , PRO C:197 , LEU C:198 , THR C:200 , MET C:202 , GLN C:203 , YTZ C:802 , HOH C:901 , HOH C:915 , HOH C:917 , HOH C:919 , HOH C:942
BINDING SITE FOR RESIDUE NAP C 801
13
BC4
SOFTWARE
SER C:154 , LEU C:155 , CYS C:156 , PHE C:161 , TYR C:167 , GLY C:196 , PRO C:197 , GLN C:203 , NAP C:801 , PEG C:805 , HOH C:902
BINDING SITE FOR RESIDUE YTZ C 802
14
BC5
SOFTWARE
ARG C:39
BINDING SITE FOR RESIDUE SO4 C 803
15
BC6
SOFTWARE
ARG A:45 , ARG C:59
BINDING SITE FOR RESIDUE SO4 C 804
16
BC7
SOFTWARE
GLY C:218 , YTZ C:802
BINDING SITE FOR RESIDUE PEG C 805
17
BC8
SOFTWARE
GLY D:11 , SER D:13 , ARG D:14 , GLY D:15 , PHE D:16 , ARG D:39 , ASN D:40 , ALA D:65 , ASP D:66 , LEU D:67 , ASN D:97 , ALA D:98 , LEU D:123 , ILE D:152 , SER D:153 , TYR D:167 , LYS D:171 , PRO D:195 , GLY D:196 , PRO D:197 , LEU D:198 , THR D:200 , MET D:202 , GLN D:203 , YTZ D:802
BINDING SITE FOR RESIDUE NAP D 801
18
BC9
SOFTWARE
SER D:154 , LEU D:155 , TYR D:167 , GLY D:196 , PRO D:197 , GLN D:203 , NAP D:801 , HOH D:914
BINDING SITE FOR RESIDUE YTZ D 802
19
CC1
SOFTWARE
ARG D:39
BINDING SITE FOR RESIDUE SO4 D 803
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4j7ua_ (A:)
1b: SCOP_d4j7ub_ (B:)
1c: SCOP_d4j7uc_ (C:)
1d: SCOP_d4j7ud_ (D:)
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Tyrosine-dependent oxidoreductases
(503)
Protein domain
:
Sepiapterin reductase
(7)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d4j7ua_
A:
1b
d4j7ub_
B:
1c
d4j7uc_
C:
1d
d4j7ud_
D:
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
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Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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set label size to 20 (allowed range: 1-58)
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Asym.Unit (174 KB)
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