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4J6O
Biol. Unit 2
Info
Asym.Unit (197 KB)
Biol.Unit 1 (98 KB)
Biol.Unit 2 (94 KB)
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Title
:
CRYSTAL STRUCTURE OF THE PHOSPHATASE DOMAIN OF C. THERMOCELLUM (BACTERIAL) PNKP
Authors
:
L. Wang, P. Smith, S. Shuman
Date
:
11 Feb 13 (Deposition) - 10 Apr 13 (Release) - 26 Jun 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Alpha/Beta Fold, Calcineurin-Like, Phosphatase, Metalloenzyme, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. K. Wang, P. Smith, S. Shuman
Structure And Mechanism Of The 2', 3' Phosphatase Component Of The Bacterial Pnkp-Hen1 Rna Repair System.
Nucleic Acids Res. V. 41 5864 2013
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Hetero Components
(3, 7)
Info
All Hetero Components
1a: CITRIC ACID (CITa)
1b: CITRIC ACID (CITb)
1c: CITRIC ACID (CITc)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
3a: MANGANESE (II) ION (MNa)
3b: MANGANESE (II) ION (MNb)
4a: TETRAETHYLENE GLYCOL (PG4a)
4b: TETRAETHYLENE GLYCOL (PG4b)
4c: TETRAETHYLENE GLYCOL (PG4c)
5a: TRIETHYLENE GLYCOL (PGEa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CIT
1
Ligand/Ion
CITRIC ACID
2
GOL
5
Ligand/Ion
GLYCEROL
3
MN
-1
Ligand/Ion
MANGANESE (II) ION
4
PG4
1
Ligand/Ion
TETRAETHYLENE GLYCOL
5
PGE
-1
Ligand/Ion
TRIETHYLENE GLYCOL
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC5 (SOFTWARE)
03: AC6 (SOFTWARE)
04: AC7 (SOFTWARE)
05: AC9 (SOFTWARE)
06: BC1 (SOFTWARE)
07: BC2 (SOFTWARE)
08: BC3 (SOFTWARE)
09: BC4 (SOFTWARE)
10: BC5 (SOFTWARE)
11: BC6 (SOFTWARE)
12: BC7 (SOFTWARE)
13: BC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:427 , HIS A:428 , HOH A:720 , HOH A:766 , SER B:335 , GLY B:336 , LYS B:337 , TYR B:354
BINDING SITE FOR RESIDUE CIT A 501
02
AC5
SOFTWARE
GLU A:346 , THR A:347 , TYR B:344
BINDING SITE FOR RESIDUE GOL A 505
03
AC6
SOFTWARE
ASN A:263 , HIS A:264 , HIS A:281 , CIT A:509 , HOH A:761 , HOH A:788 , GLY B:349 , GLU B:350 , THR B:351
BINDING SITE FOR RESIDUE GOL A 506
04
AC7
SOFTWARE
GLU A:224 , ARG B:367 , LYS B:369 , HOH B:654
BINDING SITE FOR RESIDUE GOL A 507
05
AC9
SOFTWARE
ASP A:187 , HIS A:189 , ASP A:233 , ARG A:237 , ASN A:263 , HIS A:264 , HIS A:323 , HIS A:376 , PRO A:378 , GOL A:506 , MN A:508 , HOH A:602 , HOH A:614 , HOH A:621 , HOH A:643 , HOH A:770 , THR B:351
BINDING SITE FOR RESIDUE CIT A 509
06
BC1
SOFTWARE
ASP B:187 , HIS B:189 , ASP B:233 , CIT B:502 , HOH B:603
BINDING SITE FOR RESIDUE MN B 501
07
BC2
SOFTWARE
GLU A:350 , THR A:351 , HOH A:757 , ASP B:187 , HIS B:189 , ASP B:233 , ARG B:237 , ASN B:263 , HIS B:264 , HIS B:281 , HIS B:323 , HIS B:376 , PRO B:378 , MN B:501 , HOH B:602 , HOH B:603 , HOH B:620 , HOH B:715
BINDING SITE FOR RESIDUE CIT B 502
08
BC3
SOFTWARE
LYS B:175 , VAL B:252 , LYS B:253 , SER B:254 , GLY B:255 , LEU B:258 , HOH B:611 , HOH B:649 , HOH B:723 , HOH B:729
BINDING SITE FOR RESIDUE PG4 B 503
09
BC4
SOFTWARE
THR A:351 , GLY A:355 , SER B:169 , MET B:170 , THR B:377 , PRO B:378 , HOH B:715
BINDING SITE FOR RESIDUE GOL B 504
10
BC5
SOFTWARE
GLU A:340 , TYR A:344 , THR B:347 , GLY B:349
BINDING SITE FOR RESIDUE GOL B 505
11
BC6
SOFTWARE
LYS B:327 , GLU B:346 , THR B:347 , TYR B:360
BINDING SITE FOR RESIDUE GOL B 506
12
BC7
SOFTWARE
GLU B:328 , GLU B:329 , HOH B:634
BINDING SITE FOR RESIDUE GOL B 507
13
BC8
SOFTWARE
ASN B:273 , LYS B:302 , ALA B:303
BINDING SITE FOR RESIDUE GOL B 508
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Chain B
Asymmetric Unit 1
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Asym.Unit (197 KB)
Header - Asym.Unit
Biol.Unit 1 (98 KB)
Header - Biol.Unit 1
Biol.Unit 2 (94 KB)
Header - Biol.Unit 2
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