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4J5S
Asym. Unit
Info
Asym.Unit (233 KB)
Biol.Unit 1 (64 KB)
Biol.Unit 2 (59 KB)
Biol.Unit 3 (56 KB)
Biol.Unit 4 (59 KB)
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(1)
Title
:
TARG1 (C6ORF130), TERMINAL ADP-RIBOSE GLYCOHYDROLASE 1 ADP-RIBOSE COMPLEX
Authors
:
M. J. Schellenberg, C. D. Appel, J. Krahn, R. S. Williams
Date
:
09 Feb 13 (Deposition) - 27 Mar 13 (Release) - 03 Jul 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.55
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Dna Repair, Cellular Signaling, Macro Domain, Glycohydrolase, Poly- Adp Ribose, Parp, Adp-Ribose, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Sharifi, R. Morra, C. D. Appel, M. Tallis, B. Chioza, G. Jankevicius M. A. Simpson, I. Matic, E. Ozkan, B. Golia, M. J. Schellenberg, R. Weston, J. G. Williams, M. N. Rossi, H. Galehdari, J. Krahn, A. Wan, R. C. Trembath, A. H. Crosby, D. Ahel, R. Hay, A. G. Ladurner, G. Timinszky, R. S. Williams, I. Ahel
Deficiency Of Terminal Adp-Ribose Protein Glycohydrolase Targ1/C6Orf130 In Neurodegenerative Disease.
Embo J. V. 32 1225 2013
[
close entry info
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Hetero Components
(5, 29)
Info
All Hetero Components
1a: BORATE ION (BO4a)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
3h: 1,2-ETHANEDIOL (EDOh)
3i: 1,2-ETHANEDIOL (EDOi)
3j: 1,2-ETHANEDIOL (EDOj)
3k: 1,2-ETHANEDIOL (EDOk)
3l: 1,2-ETHANEDIOL (EDOl)
3m: 1,2-ETHANEDIOL (EDOm)
3n: 1,2-ETHANEDIOL (EDOn)
3o: 1,2-ETHANEDIOL (EDOo)
3p: 1,2-ETHANEDIOL (EDOp)
3q: 1,2-ETHANEDIOL (EDOq)
3r: 1,2-ETHANEDIOL (EDOr)
3s: 1,2-ETHANEDIOL (EDOs)
4a: 1,3,2-DIOXABOROLAN-2-OL (SBEa)
5a: [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-Y... (ZZCa)
5b: [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-Y... (ZZCb)
5c: [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-Y... (ZZCc)
5d: [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-Y... (ZZCd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BO4
1
Ligand/Ion
BORATE ION
2
CL
4
Ligand/Ion
CHLORIDE ION
3
EDO
19
Ligand/Ion
1,2-ETHANEDIOL
4
SBE
1
Ligand/Ion
1,3,2-DIOXABOROLAN-2-OL
5
ZZC
4
Ligand/Ion
[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [[(2R,3R)-2,3-DIHYDROXY-4-OXO-PENTOXY]-OXIDO-PHOSPHORYL] PHOSPHATE
[
close Hetero Component info
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Sites
(29, 29)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:23 , LEU A:24 , CYS A:36 , ILE A:37 , GLY A:46 , ILE A:47 , LYS A:87 , PRO A:121 , ARG A:122 , GLY A:124 , CYS A:125 , GLY A:126 , LEU A:127 , ASP A:128 , LEU A:155 , BO4 A:202 , HOH A:307 , HOH A:310 , HOH A:315 , HOH A:342 , HOH A:352 , HOH A:465 , HOH A:487 , HOH A:489 , HOH A:491
BINDING SITE FOR RESIDUE ZZC A 201
02
AC2
SOFTWARE
ZZC A:201 , HOH A:317
BINDING SITE FOR RESIDUE BO4 A 202
03
AC3
SOFTWARE
SER A:38 , ARG A:42 , MET A:43
BINDING SITE FOR RESIDUE CL A 203
04
AC4
SOFTWARE
GLU A:39 , CYS A:41 , LEU A:61 , GLN A:65 , LYS A:66 , HOH A:386
BINDING SITE FOR RESIDUE EDO A 204
05
AC5
SOFTWARE
PHE A:25 , CYS A:27 , PRO A:28 , LYS A:29 , LYS A:54 , ARG A:79
BINDING SITE FOR RESIDUE EDO A 205
06
AC6
SOFTWARE
GLY A:78 , ARG A:79 , TYR A:80 , ASN A:113 , GLY A:114 , HOH A:308 , HOH A:327 , HOH A:351
BINDING SITE FOR RESIDUE EDO A 206
07
AC7
SOFTWARE
ASN A:134 , ALA A:137 , HOH A:340 , HOH A:475
BINDING SITE FOR RESIDUE EDO A 207
08
AC8
SOFTWARE
LYS A:53 , LYS A:54 , HOH A:427 , CYS B:27 , PRO B:28 , LYS B:29
BINDING SITE FOR RESIDUE EDO A 208
09
AC9
SOFTWARE
PRO A:28 , ASP A:31 , HOH A:316 , HOH A:328 , HOH A:363 , HOH A:387 , HOH A:517 , LYS C:52
BINDING SITE FOR RESIDUE EDO A 209
10
BC1
SOFTWARE
ASP B:23 , LEU B:24 , CYS B:36 , ILE B:37 , SER B:38 , GLY B:46 , ILE B:47 , THR B:86 , LYS B:87 , ALA B:90 , PRO B:121 , ARG B:122 , GLY B:124 , CYS B:125 , GLY B:126 , LEU B:127 , ASP B:128 , LEU B:155 , SBE B:202 , HOH B:309 , HOH B:314 , HOH B:318 , HOH B:374 , HOH B:426
BINDING SITE FOR RESIDUE ZZC B 201
11
BC2
SOFTWARE
ARG B:122 , ZZC B:201 , HOH B:358 , HOH B:454
BINDING SITE FOR RESIDUE SBE B 202
12
BC3
SOFTWARE
SER B:38 , ARG B:42 , MET B:43 , HOH B:374
BINDING SITE FOR RESIDUE CL B 203
13
BC4
SOFTWARE
PHE B:25 , CYS B:27 , PRO B:28 , LYS B:29 , LYS B:54 , ARG B:79 , HOH B:416
BINDING SITE FOR RESIDUE EDO B 204
14
BC5
SOFTWARE
PRO B:28 , ASP B:31 , SER B:119 , THR B:151 , TYR B:153 , HOH B:323 , HOH B:412 , HOH B:441
BINDING SITE FOR RESIDUE EDO B 205
15
BC6
SOFTWARE
GLY B:114 , HOH B:422
BINDING SITE FOR RESIDUE EDO B 206
16
BC7
SOFTWARE
LYS B:66 , VAL B:71 , VAL B:73 , HOH B:317 , HOH B:320 , HOH B:370
BINDING SITE FOR RESIDUE EDO B 207
17
BC8
SOFTWARE
GLU B:39 , CYS B:41 , LEU B:61 , GLN B:65 , LYS B:66 , HOH B:359
BINDING SITE FOR RESIDUE EDO B 208
18
BC9
SOFTWARE
THR B:95 , TYR B:96 , GLU B:97
BINDING SITE FOR RESIDUE EDO B 209
19
CC1
SOFTWARE
ASN B:134
BINDING SITE FOR RESIDUE EDO B 210
20
CC2
SOFTWARE
ASP C:23 , LEU C:24 , CYS C:36 , ILE C:37 , GLY C:46 , ILE C:47 , LYS C:87 , ALA C:90 , PRO C:121 , ARG C:122 , GLY C:124 , CYS C:125 , GLY C:126 , LEU C:127 , ASP C:128 , TYR C:153 , HOH C:315 , HOH C:316 , HOH C:318 , HOH C:370 , HOH C:375 , HOH C:399 , HOH C:411
BINDING SITE FOR RESIDUE ZZC C 201
21
CC3
SOFTWARE
SER C:38 , ARG C:42 , MET C:43
BINDING SITE FOR RESIDUE CL C 202
22
CC4
SOFTWARE
PHE C:25 , CYS C:27 , PRO C:28 , LYS C:29 , LYS C:54 , ARG C:79 , HOH C:373
BINDING SITE FOR RESIDUE EDO C 203
23
CC5
SOFTWARE
GLU C:39 , CYS C:41 , LEU C:61 , GLN C:65 , LYS C:66 , HOH C:354
BINDING SITE FOR RESIDUE EDO C 204
24
CC6
SOFTWARE
ASP D:23 , LEU D:24 , CYS D:36 , ILE D:37 , GLY D:46 , ILE D:47 , LYS D:87 , ALA D:90 , PRO D:121 , ARG D:122 , GLY D:124 , CYS D:125 , GLY D:126 , LEU D:127 , ASP D:128 , TYR D:153 , HOH D:309 , HOH D:310 , HOH D:314 , HOH D:331 , HOH D:380 , HOH D:388 , HOH D:411 , HOH D:413 , HOH D:437
BINDING SITE FOR RESIDUE ZZC D 201
25
CC7
SOFTWARE
SER D:38 , ARG D:42 , MET D:43
BINDING SITE FOR RESIDUE CL D 202
26
CC8
SOFTWARE
CYS D:27 , PRO D:28 , LYS D:29 , LYS D:54 , ARG D:79
BINDING SITE FOR RESIDUE EDO D 203
27
CC9
SOFTWARE
GLU D:39 , CYS D:41 , LEU D:61 , GLN D:65 , LYS D:66 , HOH D:358
BINDING SITE FOR RESIDUE EDO D 204
28
DC1
SOFTWARE
GLY D:78 , ARG D:79 , TYR D:80 , ASN D:113 , GLY D:114 , HOH D:306 , HOH D:323
BINDING SITE FOR RESIDUE EDO D 205
29
DC2
SOFTWARE
LYS D:66 , VAL D:71 , VAL D:73 , HOH D:320 , HOH D:337 , HOH D:417
BINDING SITE FOR RESIDUE EDO D 206
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
[
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]
Atom Selection
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