PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
4J1R
Asym. Unit
Info
Asym.Unit (238 KB)
Biol.Unit 1 (60 KB)
Biol.Unit 2 (61 KB)
Biol.Unit 3 (61 KB)
Biol.Unit 4 (61 KB)
Biol.Unit 5 (117 KB)
Biol.Unit 6 (118 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF GSK3B IN COMPLEX WITH INHIBITOR 15R
Authors
:
C. Zhan, Y. Wang, J. Wach, P. Sheehan, C. Zhong, R. Harris, Y. Patskovsky J. Bishop, S. Haggarty, A. Ramek, K. Berry, C. O'Herin, A. N. Koehler, A D. W. Young, S. C. Almo, New York Structural Genomics Research Co (Nysgrc)
Date
:
01 Feb 13 (Deposition) - 20 Mar 13 (Release) - 20 Mar 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: A,B (1x)
Biol. Unit 6: C,D (1x)
Keywords
:
Structural Genomics, Psi-Biology, New York Structural Genomics Research Consortium, Nysgrc, Kinase, Phosphorylation, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Wang, J. Wach, P. Sheehan, C. Zhong, C. Zhan, R. Harris, S. C. Almo, J. Bishop, S. Haggarty, A. Ramek, K. Berry, C. O'Herin, A. N. Koehler, A. W. Hung, D. W. Young
Fragment-Based Approach Using Diversity-Oriented Synthesis Yields A Gsk3B Inhibitor
To Be Published
[
close entry info
]
Hetero Components
(4, 16)
Info
All Hetero Components
1a: (2R)-2-(1H-INDOL-3-YLMETHYL)-1,4-D... (I5Ra)
1b: (2R)-2-(1H-INDOL-3-YLMETHYL)-1,4-D... (I5Rb)
1c: (2R)-2-(1H-INDOL-3-YLMETHYL)-1,4-D... (I5Rc)
1d: (2R)-2-(1H-INDOL-3-YLMETHYL)-1,4-D... (I5Rd)
2a: POTASSIUM ION (Ka)
2b: POTASSIUM ION (Kb)
2c: POTASSIUM ION (Kc)
2d: POTASSIUM ION (Kd)
3a: PHOSPHATE ION (PO4a)
3b: PHOSPHATE ION (PO4b)
3c: PHOSPHATE ION (PO4c)
3d: PHOSPHATE ION (PO4d)
4a: O-PHOSPHOTYROSINE (PTRa)
4b: O-PHOSPHOTYROSINE (PTRb)
4c: O-PHOSPHOTYROSINE (PTRc)
4d: O-PHOSPHOTYROSINE (PTRd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
I5R
4
Ligand/Ion
(2R)-2-(1H-INDOL-3-YLMETHYL)-1,4-DIHYDROPYRIDO[2,3-B]PYRAZIN-3(2H)-ONE
2
K
4
Ligand/Ion
POTASSIUM ION
3
PO4
4
Ligand/Ion
PHOSPHATE ION
4
PTR
4
Mod. Amino Acid
O-PHOSPHOTYROSINE
[
close Hetero Component info
]
Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:96 , ARG A:180 , LYS A:205 , PRO A:212 , VAL A:214
BINDING SITE FOR RESIDUE PO4 A 501
02
AC2
SOFTWARE
GLY A:63 , VAL A:70 , VAL A:110 , LEU A:132 , ASP A:133 , TYR A:134 , VAL A:135 , CYS A:199 , HOH A:616 , HOH A:619
BINDING SITE FOR RESIDUE I5R A 502
03
AC3
SOFTWARE
THR A:43 , PRO B:351
BINDING SITE FOR RESIDUE K A 503
04
AC4
SOFTWARE
ARG B:96 , ARG B:180 , LYS B:205 , ASN B:213 , VAL B:214
BINDING SITE FOR RESIDUE PO4 B 501
05
AC5
SOFTWARE
PHE B:67 , VAL B:70 , VAL B:110 , LEU B:132 , ASP B:133 , TYR B:134 , VAL B:135 , CYS B:199 , ASP B:200
BINDING SITE FOR RESIDUE I5R B 502
06
AC6
SOFTWARE
THR B:43
BINDING SITE FOR RESIDUE K B 503
07
AC7
SOFTWARE
ARG C:96 , ARG C:180 , LYS C:205 , ASN C:213 , VAL C:214
BINDING SITE FOR RESIDUE PO4 C 501
08
AC8
SOFTWARE
GLY C:63 , VAL C:70 , VAL C:110 , LEU C:132 , ASP C:133 , TYR C:134 , VAL C:135 , PRO C:136 , LEU C:188 , HOH C:617 , HOH C:620
BINDING SITE FOR RESIDUE I5R C 502
09
AC9
SOFTWARE
THR C:43 , PRO D:351
BINDING SITE FOR RESIDUE K C 503
10
BC1
SOFTWARE
ARG D:96 , ARG D:180 , LYS D:205 , ASN D:213 , VAL D:214
BINDING SITE FOR RESIDUE PO4 D 501
11
BC2
SOFTWARE
GLY D:63 , VAL D:70 , VAL D:110 , LEU D:132 , ASP D:133 , TYR D:134 , VAL D:135 , PRO D:136 , LEU D:188 , CYS D:199 , ASP D:200 , HOH D:622
BINDING SITE FOR RESIDUE I5R D 502
12
BC3
SOFTWARE
THR D:43
BINDING SITE FOR RESIDUE K D 503
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4j1ra_ (A:)
1b: SCOP_d4j1rb_ (B:)
1c: SCOP_d4j1rc_ (C:)
1d: SCOP_d4j1rd_ (D:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
Glycogen synthase kinase-3 beta (Gsk3b)
(35)
Human (Homo sapiens) [TaxId: 9606]
(35)
1a
d4j1ra_
A:
1b
d4j1rb_
B:
1c
d4j1rc_
C:
1d
d4j1rd_
D:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (238 KB)
Header - Asym.Unit
Biol.Unit 1 (60 KB)
Header - Biol.Unit 1
Biol.Unit 2 (61 KB)
Header - Biol.Unit 2
Biol.Unit 3 (61 KB)
Header - Biol.Unit 3
Biol.Unit 4 (61 KB)
Header - Biol.Unit 4
Biol.Unit 5 (117 KB)
Header - Biol.Unit 5
Biol.Unit 6 (118 KB)
Header - Biol.Unit 6
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
4J1R
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
