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4IY5
Asym. Unit
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Asym.Unit (200 KB)
Biol.Unit 1 (196 KB)
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Title
:
CRYSTAL STRUCTURE OF THE GLUA2 LIGAND-BINDING DOMAIN (S1S2J-L483Y-N754S) IN COMPLEX WITH GLUTAMATE AND CX516 AT 2.0 A RESOLUTION
Authors
:
C. Krintel, K. Frydenvang, K. Harpsoe, M. Gajhede, J. S. Kastrup
Date
:
28 Jan 13 (Deposition) - 09 Oct 13 (Release) - 09 Oct 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Ampa Receptor Ligand-Binding Domain, Glua2 S1S2J-L483Y-N754S, Cx516, Allosteric Modulation, Membrane Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
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Reference
:
C. Krintel, K. Harpsoe, L. G. Zachariassen, D. Peters, K. Frydenvang, D. S. Pickering, M. Gajhede, J. S. Kastrup
Structural Analysis Of The Positive Ampa Receptor Modulator Cx516 And Me-Cx516 In Complex With The Glua2 Ligand-Binding Domain
Acta Crystallogr. , Sect. D V. 69 1645 2013
(for further references see the
PDB file header
)
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Hetero Components
(5, 14)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
2a: PIPERIDIN-1-YL(QUINOXALIN-6-YL)MET... (CX5a)
3a: GLUTAMIC ACID (GLUa)
3b: GLUTAMIC ACID (GLUb)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
3
Ligand/Ion
CHLORIDE ION
2
CX5
1
Ligand/Ion
PIPERIDIN-1-YL(QUINOXALIN-6-YL)METHANONE
3
GLU
2
Mod. Amino Acid
GLUTAMIC ACID
4
GOL
3
Ligand/Ion
GLYCEROL
5
SO4
5
Ligand/Ion
SULFATE ION
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:61 , PRO A:89 , LEU A:90 , THR A:91 , ARG A:96 , GLY A:141 , SER A:142 , THR A:143 , GLU A:193 , TYR A:220 , HOH A:402 , HOH A:403 , HOH A:427
BINDING SITE FOR RESIDUE GLU A 301
02
AC2
SOFTWARE
SER A:140 , LYS A:144 , ARG A:148 , HOH A:419 , HOH A:429 , HOH A:512
BINDING SITE FOR RESIDUE SO4 A 302
03
AC3
SOFTWARE
ARG A:148 , TRP A:159 , ARG A:163
BINDING SITE FOR RESIDUE GOL A 303
04
AC4
SOFTWARE
LYS A:82 , LYS A:116 , HOH A:442 , HOH A:684
BINDING SITE FOR RESIDUE SO4 A 304
05
AC5
SOFTWARE
LYS A:4 , THR A:5
BINDING SITE FOR RESIDUE CL A 305
06
AC6
SOFTWARE
PRO A:105 , PHE A:106 , MET A:107 , SER A:108 , SER A:217 , LYS A:218 , GLY A:219 , PRO B:105 , PHE B:106 , MET B:107 , SER B:108 , SER B:217 , LYS B:218 , GLY B:219 , HOH B:436 , HOH B:508
BINDING SITE FOR RESIDUE CX5 B 301
07
AC7
SOFTWARE
TYR B:61 , PRO B:89 , LEU B:90 , THR B:91 , ARG B:96 , GLY B:141 , SER B:142 , THR B:143 , GLU B:193 , HOH B:402 , HOH B:412 , HOH B:445
BINDING SITE FOR RESIDUE GLU B 302
08
AC8
SOFTWARE
LYS A:183 , ARG B:31 , HOH B:429 , HOH B:432 , HOH B:588 , HOH B:594
BINDING SITE FOR RESIDUE SO4 B 303
09
AC9
SOFTWARE
SER B:140 , LYS B:144 , ARG B:148 , HOH B:441 , HOH B:497 , HOH B:657
BINDING SITE FOR RESIDUE SO4 B 304
10
BC1
SOFTWARE
ARG B:148 , TRP B:159 , ARG B:163
BINDING SITE FOR RESIDUE GOL B 305
11
BC2
SOFTWARE
SER B:194 , THR B:195 , GLU B:198 , ASN B:214 , HOH B:589
BINDING SITE FOR RESIDUE GOL B 306
12
BC3
SOFTWARE
HOH A:536 , LYS B:21 , ASN B:22 , HIS B:23 , HOH B:409 , HOH B:578
BINDING SITE FOR RESIDUE SO4 B 307
13
BC4
SOFTWARE
GLN B:244
BINDING SITE FOR RESIDUE CL B 308
14
BC5
SOFTWARE
ARG B:163
BINDING SITE FOR RESIDUE CL B 309
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d4iy5a_ (A:)
1b: SCOP_d4iy5b_ (B:)
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Organisms
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(
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Periplasmic binding protein-like II
(813)
Superfamily
:
Periplasmic binding protein-like II
(813)
Family
:
Phosphate binding protein-like
(463)
Protein domain
:
Glutamate receptor ligand binding core
(127)
Norway rat (Rattus norvegicus), GluR2 [TaxId: 10116]
(115)
1a
d4iy5a_
A:
1b
d4iy5b_
B:
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CATH Domains
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Pfam Domains
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