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4ISZ
Asym. Unit
Info
Asym.Unit (320 KB)
Biol.Unit 1 (158 KB)
Biol.Unit 2 (158 KB)
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(1)
Title
:
RNA LIGASE RTCB IN COMPLEX WITH GTP ALPHAS AND MN(II)
Authors
:
K. K. Desai, C. A. Bingman, G. N. Phillips Jr. , R. T. Raines
Date
:
17 Jan 13 (Deposition) - 10 Apr 13 (Release) - 01 May 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Rna Ligase, Ligase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. K. Desai, C. A. Bingman, G. N. Phillips, R. T. Raines
Structures Of The Noncanonical Rna Ligase Rtcb Reveal The Mechanism Of Histidine Guanylylation.
Biochemistry V. 52 2518 2013
[
close entry info
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Hetero Components
(4, 27)
Info
All Hetero Components
1a: GUANOSINE-5'-RP-ALPHA-THIO-TRIPHOS... (GAVa)
1b: GUANOSINE-5'-RP-ALPHA-THIO-TRIPHOS... (GAVb)
2a: MANGANESE (II) ION (MNa)
2b: MANGANESE (II) ION (MNb)
2c: MANGANESE (II) ION (MNc)
2d: MANGANESE (II) ION (MNd)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
3m: SULFATE ION (SO4m)
3n: SULFATE ION (SO4n)
3o: SULFATE ION (SO4o)
3p: SULFATE ION (SO4p)
3q: SULFATE ION (SO4q)
3r: SULFATE ION (SO4r)
4a: SUCROSE (SUCa)
4b: SUCROSE (SUCb)
4c: SUCROSE (SUCc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GAV
2
Ligand/Ion
GUANOSINE-5'-RP-ALPHA-THIO-TRIPHOSPHATE
2
MN
4
Ligand/Ion
MANGANESE (II) ION
3
SO4
18
Ligand/Ion
SULFATE ION
4
SUC
3
Ligand/Ion
SUCROSE
[
close Hetero Component info
]
Sites
(27, 27)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:95 , CYS A:98 , ASN A:202 , HIS A:203 , PHE A:204 , GLU A:206 , HIS A:234 , HIS A:329 , ASN A:330 , PRO A:378 , GLY A:379 , SER A:380 , MET A:381 , SER A:385 , HIS A:404 , ALA A:406 , GLY A:407 , TYR A:451 , LYS A:480 , MN A:502 , MN A:503 , HOH A:682 , HOH A:697 , HOH A:734 , HOH A:751
BINDING SITE FOR RESIDUE GAV A 501
02
AC2
SOFTWARE
CYS A:98 , HIS A:234 , HIS A:329 , GAV A:501 , MN A:503
BINDING SITE FOR RESIDUE MN A 502
03
AC3
SOFTWARE
ASP A:95 , CYS A:98 , HIS A:203 , GAV A:501 , MN A:502
BINDING SITE FOR RESIDUE MN A 503
04
AC4
SOFTWARE
SER A:200 , HIS A:203 , ARG A:238 , HIS A:242 , SO4 A:510 , HOH A:615 , HOH A:713
BINDING SITE FOR RESIDUE SO4 A 504
05
AC5
SOFTWARE
ARG A:260 , ARG B:21 , TRP B:263 , PRO B:264
BINDING SITE FOR RESIDUE SO4 A 505
06
AC6
SOFTWARE
TYR A:70 , GLY A:93 , TYR A:94 , LYS A:351 , HOH A:649 , HOH A:745
BINDING SITE FOR RESIDUE SO4 A 506
07
AC7
SOFTWARE
GLN A:185 , HOH A:614 , HOH A:635 , HOH A:789 , HOH A:804
BINDING SITE FOR RESIDUE SO4 A 507
08
AC8
SOFTWARE
LYS A:212 , ARG A:472
BINDING SITE FOR RESIDUE SO4 A 508
09
AC9
SOFTWARE
ARG A:366 , ARG A:369 , HOH A:705
BINDING SITE FOR RESIDUE SO4 A 509
10
BC1
SOFTWARE
ARG A:190 , GLN A:194 , SO4 A:504 , HOH A:732 , HOH A:742 , SER B:439 , MET B:440
BINDING SITE FOR RESIDUE SO4 A 510
11
BC2
SOFTWARE
GLY A:341 , LYS A:342 , ARG A:343
BINDING SITE FOR RESIDUE SO4 A 511
12
BC3
SOFTWARE
SER A:439 , MET A:440 , ARG A:441 , HOH A:637 , ARG B:412
BINDING SITE FOR RESIDUE SO4 A 512
13
BC4
SOFTWARE
LYS A:17 , ARG A:23 , PRO A:25 , TYR A:57 , LYS A:58 , ASP A:340 , HOH A:755
BINDING SITE FOR RESIDUE SUC A 513
14
BC5
SOFTWARE
GLU A:336 , PRO A:358 , HIS A:361 , GLU A:362 , GLU A:392 , HOH A:656 , HOH A:696 , HOH A:701
BINDING SITE FOR RESIDUE SUC A 514
15
BC6
SOFTWARE
ASP B:95 , CYS B:98 , ASN B:202 , HIS B:203 , PHE B:204 , GLU B:206 , HIS B:234 , HIS B:329 , ASN B:330 , PRO B:378 , GLY B:379 , SER B:380 , MET B:381 , SER B:385 , HIS B:404 , ALA B:406 , GLY B:407 , TYR B:451 , LYS B:480 , MN B:502 , MN B:503 , HOH B:656 , HOH B:716 , HOH B:728 , HOH B:785
BINDING SITE FOR RESIDUE GAV B 501
16
BC7
SOFTWARE
CYS B:98 , HIS B:234 , HIS B:329 , GAV B:501 , MN B:503
BINDING SITE FOR RESIDUE MN B 502
17
BC8
SOFTWARE
ASP B:95 , CYS B:98 , HIS B:203 , GAV B:501 , MN B:502 , HOH B:716
BINDING SITE FOR RESIDUE MN B 503
18
BC9
SOFTWARE
SER B:200 , HIS B:203 , ARG B:238 , HOH B:614 , HOH B:716 , HOH B:733
BINDING SITE FOR RESIDUE SO4 B 504
19
CC1
SOFTWARE
ARG B:366 , ARG B:369 , HOH B:779
BINDING SITE FOR RESIDUE SO4 B 505
20
CC2
SOFTWARE
LYS B:342 , ARG B:343
BINDING SITE FOR RESIDUE SO4 B 506
21
CC3
SOFTWARE
LYS B:212 , ARG B:472
BINDING SITE FOR RESIDUE SO4 B 507
22
CC4
SOFTWARE
SER B:411 , ARG B:412 , LYS B:413
BINDING SITE FOR RESIDUE SO4 B 508
23
CC5
SOFTWARE
LYS A:83 , HOH A:693 , ARG B:254 , LYS B:258
BINDING SITE FOR RESIDUE SO4 B 509
24
CC6
SOFTWARE
TYR B:70 , ILE B:74 , TYR B:94 , LYS B:351 , HOH B:686
BINDING SITE FOR RESIDUE SO4 B 510
25
CC7
SOFTWARE
ARG A:27 , LYS B:220 , HOH B:726
BINDING SITE FOR RESIDUE SO4 B 511
26
CC8
SOFTWARE
ARG A:436 , ARG B:190 , GLN B:194 , GLY B:239
BINDING SITE FOR RESIDUE SO4 B 512
27
CC9
SOFTWARE
LYS B:17 , ARG B:23 , PRO B:25 , TYR B:57 , LYS B:58 , VAL B:339 , ASP B:340 , HOH B:689 , HOH B:693 , HOH B:732 , HOH B:783
BINDING SITE FOR RESIDUE SUC B 513
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d4isza_ (A:)
1b: SCOP_d4iszb_ (B:)
View:
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Label:
Classes
(
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(
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Folds
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Superfamilies
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Hypothetical protein PH1602
(7)
Superfamily
:
Hypothetical protein PH1602
(7)
Family
:
Hypothetical protein PH1602
(6)
Protein domain
:
Hypothetical protein PH1602
(5)
Pyrococcus horikoshii [TaxId: 53953]
(5)
1a
d4isza_
A:
1b
d4iszb_
B:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
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Sorry, no Info available
[
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]
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Protein & NOT Variant
Protein & NOT Site
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Chain A
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Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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Asym.Unit (320 KB)
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