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4ISU
Asym. Unit
Info
Asym.Unit (180 KB)
Biol.Unit 1 (90 KB)
Biol.Unit 2 (90 KB)
Biol.Unit 3 (47 KB)
Biol.Unit 4 (47 KB)
Biol.Unit 5 (47 KB)
Biol.Unit 6 (47 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE GLUA2 LIGAND-BINDING DOMAIN (S1S2J) IN COMPLEX WITH THE ANTAGONIST (2R)-IKM-159 AT 2.3A RESOLUTION.
Authors
:
L. Juknaite, K. Frydenvang, J. S. Kastrup
Date
:
17 Jan 13 (Deposition) - 20 Mar 13 (Release) - 22 May 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Biol. Unit 3: A (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: C (1x)
Biol. Unit 6: B (1x)
Keywords
:
Ampa Receptor Ligand-Binding Domain, Glur2-S1S2J, Antagonist, Membrane Protein, Membrane Protein-Antagonist Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
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Reference
:
L. Juknaite, Y. Sugamata, K. Tokiwa, Y. Ishikawa, S. Takamizawa, A. Eng, R. Sakai, D. S. Pickering, K. Frydenvang, G. T. Swanson, J. S. Kastrup, M. Oikawa
Studies On An (S)-2-Amino-3-(3-Hydroxy-5-Methyl-4-Isoxazolyl)Propionic Acid (Ampa) Receptor Antagonist Ikm-159: Asymmetric Synthesis, Neuroactivity, And Structural Characterization.
J. Med. Chem. V. 56 2283 2013
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Hetero Components
(3, 16)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
2a: (4AS,5AR,6R,8AS,8BS)-5A-(CARBOXYME... (IKMa)
2b: (4AS,5AR,6R,8AS,8BS)-5A-(CARBOXYME... (IKMb)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
8
Ligand/Ion
CHLORIDE ION
2
IKM
2
Ligand/Ion
(4AS,5AR,6R,8AS,8BS)-5A-(CARBOXYMETHYL)-8-OXO-2,4A,5A,6,7,8,8A,8B-OCTAHYDRO-1H-PYRROLO[3',4':4,5]FURO[3,2-B]PYRIDINE-6-CARBOXYLIC ACID
3
SO4
6
Ligand/Ion
SULFATE ION
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
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Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:61 , PRO A:89 , THR A:91 , ARG A:96 , LEU A:138 , GLY A:141 , SER A:142 , THR A:174 , GLU A:193 , TYR A:220 , HOH A:510
BINDING SITE FOR RESIDUE IKM A 301
02
AC2
SOFTWARE
HIS A:23 , LYS A:144 , ARG A:148
BINDING SITE FOR RESIDUE SO4 A 302
03
AC3
SOFTWARE
THR A:174
BINDING SITE FOR RESIDUE CL A 303
04
AC4
SOFTWARE
SER A:194 , GLU A:198
BINDING SITE FOR RESIDUE CL A 304
05
AC5
SOFTWARE
ARG D:96 , SER D:142
BINDING SITE FOR RESIDUE SO4 D 301
06
AC6
SOFTWARE
SER D:194 , GLU D:198
BINDING SITE FOR RESIDUE CL D 303
07
AC7
SOFTWARE
HIS C:23 , LYS C:144 , ARG C:148 , ARG C:163
BINDING SITE FOR RESIDUE SO4 C 301
08
AC8
SOFTWARE
TYR C:61 , THR C:91 , ARG C:96 , SER C:142
BINDING SITE FOR RESIDUE SO4 C 302
09
AC9
SOFTWARE
GLU C:198
BINDING SITE FOR RESIDUE CL C 303
10
BC1
SOFTWARE
SER C:140 , ARG C:148
BINDING SITE FOR RESIDUE CL C 304
11
BC2
SOFTWARE
TYR B:61 , PRO B:89 , THR B:91 , ARG B:96 , LEU B:138 , GLY B:141 , SER B:142 , THR B:174 , GLU B:193 , TYR B:220 , HOH B:454 , HOH B:466 , HOH B:503
BINDING SITE FOR RESIDUE IKM B 301
12
BC3
SOFTWARE
LYS B:144 , ARG B:148 , ARG B:163 , HIS D:23
BINDING SITE FOR RESIDUE SO4 B 302
13
BC4
SOFTWARE
HIS B:23 , LYS D:144 , ARG D:148 , TRP D:159
BINDING SITE FOR RESIDUE SO4 B 303
14
BC5
SOFTWARE
THR B:174
BINDING SITE FOR RESIDUE CL B 304
15
BC6
SOFTWARE
SER B:194 , GLU B:198
BINDING SITE FOR RESIDUE CL B 305
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4isua_ (A:)
1b: SCOP_d4isub_ (B:)
1c: SCOP_d4isuc_ (C:)
1d: SCOP_d4isud_ (D:)
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Periplasmic binding protein-like II
(813)
Superfamily
:
Periplasmic binding protein-like II
(813)
Family
:
Phosphate binding protein-like
(463)
Protein domain
:
Glutamate receptor ligand binding core
(127)
Norway rat (Rattus norvegicus), GluR2 [TaxId: 10116]
(115)
1a
d4isua_
A:
1b
d4isub_
B:
1c
d4isuc_
C:
1d
d4isud_
D:
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (180 KB)
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Biol.Unit 2 (90 KB)
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Biol.Unit 3 (47 KB)
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Biol.Unit 5 (47 KB)
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