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4IPW
Biol. Unit 1
Info
Asym.Unit (146 KB)
Biol.Unit 1 (140 KB)
Biol.Unit 2 (278 KB)
Biol.Unit 3 (278 KB)
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(1)
Title
:
SUBSTRATE AND REACTION SPECIFICITY OF MYCOBACTERIUM TUBERCULOSIS CYTOCHROME P450 CYP121
Authors
:
M. Fonvielle, M. H. Ledu, O. Lequin, A. Lecoq, M. Jacquet, R. Thai, S. Dub G. Grach, M. Gondry, P. Belin
Date
:
10 Jan 13 (Deposition) - 01 May 13 (Release) - 03 Jul 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.40
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Biol. Unit 2: A (2x)
Biol. Unit 3: A (2x)
Keywords
:
P450 Fold, Oxidase, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Fonvielle, M. H. Le Du, O. Lequin, A. Lecoq, M. Jacquet, R. Thai, S. Dubois, G. Grach, M. Gondry, P. Belin
Substrate And Reaction Specificity Of Mycobacterium Tuberculosis Cytochrome P450 Cyp121: Insights From Biochemical Studies And Crystal Structures.
J. Biol. Chem. V. 288 17347 2013
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Hetero Components
(5, 12)
Info
All Hetero Components
1a: (3S,6S)-3-(3,4-DIHYDROXYBENZYL)-6-... (1G7a)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
3a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
4a: PHOSPHATE ION (PO4a)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
View:
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Label:
No.
Name
Count
Type
Full Name
1
1G7
1
Ligand/Ion
(3S,6S)-3-(3,4-DIHYDROXYBENZYL)-6-(4-HYDROXYBENZYL)PIPERAZINE-2,5-DIONE
2
GOL
5
Ligand/Ion
GLYCEROL
3
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
4
PO4
1
Ligand/Ion
PHOSPHATE ION
5
SO4
4
Ligand/Ion
SULFATE ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
MET A:62 , MET A:86 , HIS A:146 , PHE A:230 , GLY A:234 , SER A:237 , PHE A:241 , PHE A:280 , LEU A:284 , ARG A:286 , ALA A:337 , PHE A:338 , GLY A:339 , HIS A:343 , CYS A:345 , PRO A:346 , 1G7 A:406 , HOH A:501 , HOH A:524 , HOH A:567 , HOH A:613 , HOH A:722 , HOH A:1088
BINDING SITE FOR RESIDUE HEM A 401
02
AC2
SOFTWARE
ARG A:58 , SER A:61 , MET A:62 , LYS A:63 , HIS A:343 , HOH A:784 , HOH A:793 , HOH A:834 , HOH A:1082 , HOH A:1107
BINDING SITE FOR RESIDUE SO4 A 402
03
AC3
SOFTWARE
SER A:12 , ARG A:17 , HOH A:672 , HOH A:711 , HOH A:766 , HOH A:890
BINDING SITE FOR RESIDUE SO4 A 403
04
AC4
SOFTWARE
LEU A:7 , ARG A:32 , ARG A:300 , HOH A:783
BINDING SITE FOR RESIDUE SO4 A 404
05
AC5
SOFTWARE
ARG A:134 , ASN A:135 , PHE A:161 , ARG A:381 , ARG A:391 , HOH A:563 , HOH A:657
BINDING SITE FOR RESIDUE SO4 A 405
06
AC6
SOFTWARE
MET A:62 , THR A:77 , VAL A:78 , VAL A:82 , VAL A:83 , ASN A:85 , ALA A:167 , PHE A:168 , THR A:229 , ARG A:386 , HEM A:401 , HOH A:502 , HOH A:540 , HOH A:546 , HOH A:567 , HOH A:623 , HOH A:751 , HOH A:865
BINDING SITE FOR RESIDUE 1G7 A 406
07
AC7
SOFTWARE
MET A:62 , THR A:65 , ARG A:72 , ASN A:74 , LEU A:76 , PRO A:285 , HOH A:566 , HOH A:751 , HOH A:972
BINDING SITE FOR RESIDUE GOL A 407
08
AC8
SOFTWARE
VAL A:5 , GLU A:64 , ALA A:67 , THR A:289 , LYS A:301 , HOH A:868 , HOH A:889 , HOH A:1026
BINDING SITE FOR RESIDUE GOL A 408
09
AC9
SOFTWARE
VAL A:5 , GLU A:8 , ALA A:68 , GLY A:69 , ALA A:70 , PRO A:71 , GLY A:302 , HOH A:1026
BINDING SITE FOR RESIDUE GOL A 409
10
BC1
SOFTWARE
LYS A:211 , PRO A:330 , ASN A:331 , PRO A:332 , THR A:333 , SER A:334 , HOH A:760 , HOH A:761 , HOH A:902
BINDING SITE FOR RESIDUE PO4 A 410
11
BC2
SOFTWARE
GLU A:81 , TRP A:182 , ILE A:186 , GLU A:221 , THR A:225 , GLN A:254 , HOH A:573 , HOH A:625 , HOH A:626 , HOH A:875
BINDING SITE FOR RESIDUE GOL A 411
12
BC3
SOFTWARE
ASP A:16 , SER A:248 , GLN A:251 , ARG A:252 , ILE A:276 , HOH A:560 , HOH A:764 , HOH A:1132
BINDING SITE FOR RESIDUE GOL A 412
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d4ipwa_ (A:)
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Class
:
All alpha proteins
(14657)
Fold
:
Cytochrome P450
(480)
Superfamily
:
Cytochrome P450
(480)
Family
:
Cytochrome P450
(323)
Protein domain
:
Cyp121 monooxygenase (P450 Mt2)
(28)
Mycobacterium tuberculosis [TaxId: 1773]
(28)
1a
d4ipwa_
A:
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (146 KB)
Header - Asym.Unit
Biol.Unit 1 (140 KB)
Header - Biol.Unit 1
Biol.Unit 2 (278 KB)
Header - Biol.Unit 2
Biol.Unit 3 (278 KB)
Header - Biol.Unit 3
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