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4IOC
Asym. Unit
Info
Asym.Unit (1.6 MB)
Biol.Unit 1, α-C (1.6 MB)
Biol.Unit 1 (1.6 MB)
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(1)
Title
:
CRYSTAL STRUCTURE OF COMPOUND 4F BOUND TO LARGE RIBOSOMAL SUBUNIT (50S) FROM DEINOCOCCUS RADIODURANS
Authors
:
S. Han, E. S. Marr
Date
:
07 Jan 13 (Deposition) - 06 Mar 13 (Release) - 20 Mar 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.60
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,1,2,3,4
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,1,2,3,4 (1x)
Keywords
:
Ribosome-Ribosome Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. V. Magee, S. Han, S. P. Mccurdy, T. T. Nguyen, K. Granskog, E. S. Marr, B. A. Maguire, M. D. Huband, J. M. Chen, T. A. Subashi, V. Shanmugasundaram
Novel 3-O-Carbamoyl Erythromycin A Derivatives (Carbamolides) With Activity Against Resistant Staphylococcal And Streptococcal Isolates.
Bioorg. Med. Chem. Lett. V. 23 1727 2013
[
close entry info
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Hetero Components
(2, 36)
Info
All Hetero Components
1a: (3AS,4R,7R,8S,9S,10R,11R,13R,15S,1... (1F4a)
2a: MAGNESIUM ION (MGa)
2aa: MAGNESIUM ION (MGaa)
2ab: MAGNESIUM ION (MGab)
2ac: MAGNESIUM ION (MGac)
2ad: MAGNESIUM ION (MGad)
2ae: MAGNESIUM ION (MGae)
2af: MAGNESIUM ION (MGaf)
2ag: MAGNESIUM ION (MGag)
2ah: MAGNESIUM ION (MGah)
2ai: MAGNESIUM ION (MGai)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
2e: MAGNESIUM ION (MGe)
2f: MAGNESIUM ION (MGf)
2g: MAGNESIUM ION (MGg)
2h: MAGNESIUM ION (MGh)
2i: MAGNESIUM ION (MGi)
2j: MAGNESIUM ION (MGj)
2k: MAGNESIUM ION (MGk)
2l: MAGNESIUM ION (MGl)
2m: MAGNESIUM ION (MGm)
2n: MAGNESIUM ION (MGn)
2o: MAGNESIUM ION (MGo)
2p: MAGNESIUM ION (MGp)
2q: MAGNESIUM ION (MGq)
2r: MAGNESIUM ION (MGr)
2s: MAGNESIUM ION (MGs)
2t: MAGNESIUM ION (MGt)
2u: MAGNESIUM ION (MGu)
2v: MAGNESIUM ION (MGv)
2w: MAGNESIUM ION (MGw)
2x: MAGNESIUM ION (MGx)
2y: MAGNESIUM ION (MGy)
2z: MAGNESIUM ION (MGz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1F4
1
Ligand/Ion
(3AS,4R,7R,8S,9S,10R,11R,13R,15S,15AR)-4-ETHYL-11-METHOXY-3A,7,9,11,13,15-HEXAMETHYL-2,6,14-TRIOXO-10-{[3,4,6-TRIDEOXY-3-(DIMETHYLAMINO)-BETA-D-XYLO-HEXOPYRANOSYL]OXY}TETRADECAHYDRO-2H-OXACYCLOTETRADECINO[4,3-D][1,3]OXAZOL-8-YL (2R)-4,4-DIMETHYL-2-(PYRIDIN-3-YL)PYRROLIDINE-1-CARBOXYLATE
2
MG
35
Ligand/Ion
MAGNESIUM ION
[
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Sites
(32, 32)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
U X:2057 , U X:2222
BINDING SITE FOR RESIDUE MG X 2901
02
AC2
SOFTWARE
G X:2415
BINDING SITE FOR RESIDUE MG X 2902
03
AC3
SOFTWARE
U X:1370 , C X:1385
BINDING SITE FOR RESIDUE MG X 2903
04
AC4
SOFTWARE
G X:746 , A X:747
BINDING SITE FOR RESIDUE MG X 2904
05
AC5
SOFTWARE
C X:745 , G X:772
BINDING SITE FOR RESIDUE MG X 2905
06
AC6
SOFTWARE
G X:1767
BINDING SITE FOR RESIDUE MG X 2906
07
AC7
SOFTWARE
C X:1765
BINDING SITE FOR RESIDUE MG X 2907
08
AC8
SOFTWARE
G X:2743
BINDING SITE FOR RESIDUE MG X 2909
09
AC9
SOFTWARE
G X:2555 , A X:2556
BINDING SITE FOR RESIDUE MG X 2910
10
BC1
SOFTWARE
G X:2806
BINDING SITE FOR RESIDUE MG X 2912
11
BC2
SOFTWARE
G X:2851
BINDING SITE FOR RESIDUE MG X 2913
12
BC3
SOFTWARE
C X:1979 , A X:1980
BINDING SITE FOR RESIDUE MG X 2914
13
BC4
SOFTWARE
U X:2666
BINDING SITE FOR RESIDUE MG X 2915
14
BC5
SOFTWARE
G X:2699
BINDING SITE FOR RESIDUE MG X 2916
15
BC6
SOFTWARE
A X:815
BINDING SITE FOR RESIDUE MG X 2917
16
BC7
SOFTWARE
G X:1992
BINDING SITE FOR RESIDUE MG X 2918
17
BC8
SOFTWARE
G X:1760 , G X:1761 , G X:1942
BINDING SITE FOR RESIDUE MG X 2920
18
BC9
SOFTWARE
G X:2503
BINDING SITE FOR RESIDUE MG X 2921
19
CC1
SOFTWARE
A X:459
BINDING SITE FOR RESIDUE MG X 2922
20
CC2
SOFTWARE
ARG N:33 , G X:1266
BINDING SITE FOR RESIDUE MG X 2923
21
CC3
SOFTWARE
G X:462 , G X:464
BINDING SITE FOR RESIDUE MG X 2924
22
CC4
SOFTWARE
G X:464 , A X:468 , G X:469
BINDING SITE FOR RESIDUE MG X 2925
23
CC5
SOFTWARE
A X:2430
BINDING SITE FOR RESIDUE MG X 2927
24
CC6
SOFTWARE
G X:2425 , G X:2481
BINDING SITE FOR RESIDUE MG X 2928
25
CC7
SOFTWARE
ARG P:111 , C X:759 , A X:2041 , A X:2042 , A X:2482 , G X:2484 , C X:2589 , U X:2590
BINDING SITE FOR RESIDUE 1F4 X 2929
26
CC8
SOFTWARE
GLU J:39 , A Y:91 , G Y:92
BINDING SITE FOR RESIDUE MG Y 201
27
CC9
SOFTWARE
G Y:99 , G Y:100
BINDING SITE FOR RESIDUE MG Y 202
28
DC1
SOFTWARE
G Y:85
BINDING SITE FOR RESIDUE MG Y 203
29
DC2
SOFTWARE
C Y:98
BINDING SITE FOR RESIDUE MG Y 204
30
DC3
SOFTWARE
A Y:74 , A Y:104 , G Y:105
BINDING SITE FOR RESIDUE MG Y 205
31
DC4
SOFTWARE
C Y:88 , G Y:89
BINDING SITE FOR RESIDUE MG Y 206
32
DC5
SOFTWARE
ASN M:58
BINDING SITE FOR RESIDUE MG M 201
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (1.6 MB)
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