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4IO9
Asym. Unit
Info
Asym.Unit (1.6 MB)
Biol.Unit 1, α-C (1.6 MB)
Biol.Unit 1 (1.6 MB)
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(1)
Title
:
CRYSTAL STRUCTURE OF COMPOUND 4D BOUND TO LARGE RIBOSOMAL SUBUNIT (50S) FROM DEINOCOCCUS RADIODURANS
Authors
:
S. Han, E. S. Marr
Date
:
07 Jan 13 (Deposition) - 06 Mar 13 (Release) - 20 Mar 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,1,2,3,4
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,1,2,3,4 (1x)
Keywords
:
Ribosome-Ribosome Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. V. Magee, S. Han, S. P. Mccurdy, T. T. Nguyen, K. Granskog, E. S. Marr, B. A. Maguire, M. D. Huband, J. M. Chen, T. A. Subashi, V. Shanmugasundaram
Novel 3-O-Carbamoyl Erythromycin A Derivatives (Carbamolides) With Activity Against Resistant Staphylococcal And Streptococcal Isolates.
Bioorg. Med. Chem. Lett. V. 23 1727 2013
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Hetero Components
(2, 36)
Info
All Hetero Components
1a: (3AS,4R,7R,8S,9S,10R,11R,13R,15R,1... (1F2a)
2a: MAGNESIUM ION (MGa)
2aa: MAGNESIUM ION (MGaa)
2ab: MAGNESIUM ION (MGab)
2ac: MAGNESIUM ION (MGac)
2ad: MAGNESIUM ION (MGad)
2ae: MAGNESIUM ION (MGae)
2af: MAGNESIUM ION (MGaf)
2ag: MAGNESIUM ION (MGag)
2ah: MAGNESIUM ION (MGah)
2ai: MAGNESIUM ION (MGai)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
2e: MAGNESIUM ION (MGe)
2f: MAGNESIUM ION (MGf)
2g: MAGNESIUM ION (MGg)
2h: MAGNESIUM ION (MGh)
2i: MAGNESIUM ION (MGi)
2j: MAGNESIUM ION (MGj)
2k: MAGNESIUM ION (MGk)
2l: MAGNESIUM ION (MGl)
2m: MAGNESIUM ION (MGm)
2n: MAGNESIUM ION (MGn)
2o: MAGNESIUM ION (MGo)
2p: MAGNESIUM ION (MGp)
2q: MAGNESIUM ION (MGq)
2r: MAGNESIUM ION (MGr)
2s: MAGNESIUM ION (MGs)
2t: MAGNESIUM ION (MGt)
2u: MAGNESIUM ION (MGu)
2v: MAGNESIUM ION (MGv)
2w: MAGNESIUM ION (MGw)
2x: MAGNESIUM ION (MGx)
2y: MAGNESIUM ION (MGy)
2z: MAGNESIUM ION (MGz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1F2
1
Ligand/Ion
(3AS,4R,7R,8S,9S,10R,11R,13R,15R,15AR)-4-ETHYL-11-METHOXY-3A,7,9,11,13,15-HEXAMETHYL-2,6,14-TRIOXO-10-{[3,4,6-TRIDEOXY-3-(DIMETHYLAMINO)-BETA-D-XYLO-HEXOPYRANOSYL]OXY}TETRADECAHYDRO-2H-OXACYCLOTETRADECINO[4,3-D][1,3]OXAZOL-8-YL (2R)-2-(PYRIDIN-3-YL)PYRROLIDINE-1-CARBOXYLATE
2
MG
35
Ligand/Ion
MAGNESIUM ION
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Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
U X:2222
BINDING SITE FOR RESIDUE MG X 2901
02
AC2
SOFTWARE
G X:2415
BINDING SITE FOR RESIDUE MG X 2902
03
AC3
SOFTWARE
U X:1370 , C X:1385
BINDING SITE FOR RESIDUE MG X 2903
04
AC4
SOFTWARE
C X:745 , G X:772 , G X:773
BINDING SITE FOR RESIDUE MG X 2905
05
AC5
SOFTWARE
G X:1767
BINDING SITE FOR RESIDUE MG X 2906
06
AC6
SOFTWARE
C X:1765
BINDING SITE FOR RESIDUE MG X 2907
07
AC7
SOFTWARE
G X:2743
BINDING SITE FOR RESIDUE MG X 2909
08
AC8
SOFTWARE
G X:2036 , C X:2554 , G X:2555 , A X:2556
BINDING SITE FOR RESIDUE MG X 2910
09
AC9
SOFTWARE
G X:2805
BINDING SITE FOR RESIDUE MG X 2912
10
BC1
SOFTWARE
A X:1980
BINDING SITE FOR RESIDUE MG X 2914
11
BC2
SOFTWARE
G X:2665 , U X:2666 , U X:2700
BINDING SITE FOR RESIDUE MG X 2915
12
BC3
SOFTWARE
A X:815
BINDING SITE FOR RESIDUE MG X 2917
13
BC4
SOFTWARE
G X:1760 , G X:1761 , G X:1942
BINDING SITE FOR RESIDUE MG X 2920
14
BC5
SOFTWARE
G X:1266
BINDING SITE FOR RESIDUE MG X 2923
15
BC6
SOFTWARE
G X:462 , G X:464
BINDING SITE FOR RESIDUE MG X 2924
16
BC7
SOFTWARE
G X:464 , C X:465 , A X:468
BINDING SITE FOR RESIDUE MG X 2925
17
BC8
SOFTWARE
C X:2431 , U X:2564
BINDING SITE FOR RESIDUE MG X 2927
18
BC9
SOFTWARE
G X:2426
BINDING SITE FOR RESIDUE MG X 2928
19
CC1
SOFTWARE
A X:2041 , A X:2045 , G X:2484 , C X:2589 , U X:2590 , ALA Z:2
BINDING SITE FOR RESIDUE 1F2 X 2929
20
CC2
SOFTWARE
G Y:99
BINDING SITE FOR RESIDUE MG Y 201
21
CC3
SOFTWARE
G Y:85
BINDING SITE FOR RESIDUE MG Y 202
22
CC4
SOFTWARE
C Y:83 , C Y:98
BINDING SITE FOR RESIDUE MG Y 203
23
CC5
SOFTWARE
GLU J:39
BINDING SITE FOR RESIDUE MG J 201
24
CC6
SOFTWARE
ASN M:58
BINDING SITE FOR RESIDUE MG M 201
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Chain F
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Chain H
Chain I
Chain J
Chain K
Chain L
Chain M
Chain N
Chain O
Chain P
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Asymmetric Unit 1
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Example Command
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (1.6 MB)
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