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4INF
Asym. Unit
Info
Asym.Unit (548 KB)
Biol.Unit 1 (275 KB)
Biol.Unit 2 (272 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AMIDOHYDROLASE SARO_0799 (TARGET EFI-505250) FROM NOVOSPHINGOBIUM AROMATICIVORANS DSM 12444 WITH BOUND CALCIUM
Authors
:
Y. Patskovsky, R. Toro, R. Bhosle, B. Hillerich, R. D. Seidel, E. Washin A. Scott Glenn, S. Chowdhury, B. Evans, J. Hammonds, W. D. Zencheck, H J. A. Gerlt, F. M. Raushel, S. C. Almo, Enzyme Function Initiative (
Date
:
04 Jan 13 (Deposition) - 16 Jan 13 (Release) - 16 Jan 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.48
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Hydrolase, Amidohydrolase, Metal Binding Site, Enzyme Function Initiative, Efi
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Patskovsky, R. Toro, R. Bhosle, B. Hillerich, R. D. Seidel, E. Washington, A. Scott Glenn, S. Chowdhury, B. Evans, J. Hammonds, W. D. Zencheck, H. J. Imker, J. A. Gerlt, F. M. Raushel, S. C. Almo
Crystal Structure Of Amidohydrolase Sarp_0799 (Target Efi-505250) From Novosphingobium Aromaticivorans
To Be Published
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Hetero Components
(4, 25)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
2f: CHLORIDE ION (CLf)
2g: CHLORIDE ION (CLg)
2h: CHLORIDE ION (CLh)
2i: CHLORIDE ION (CLi)
2j: CHLORIDE ION (CLj)
2k: CHLORIDE ION (CLk)
2l: CHLORIDE ION (CLl)
2m: CHLORIDE ION (CLm)
2n: CHLORIDE ION (CLn)
2o: CHLORIDE ION (CLo)
2p: CHLORIDE ION (CLp)
3a: GLYCEROL (GOLa)
4a: OXALIC ACID (OXDa)
4b: OXALIC ACID (OXDb)
4c: OXALIC ACID (OXDc)
4d: OXALIC ACID (OXDd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
4
Ligand/Ion
CALCIUM ION
2
CL
16
Ligand/Ion
CHLORIDE ION
3
GOL
1
Ligand/Ion
GLYCEROL
4
OXD
4
Ligand/Ion
OXALIC ACID
[
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Sites
(25, 25)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:19 , HIS A:188 , ASP A:314 , HOH A:535 , HOH A:597 , HOH A:1059
BINDING SITE FOR RESIDUE CA A 401
02
AC2
SOFTWARE
TYR A:51 , ALA A:208 , HOH A:769 , ARG B:265
BINDING SITE FOR RESIDUE CL A 402
03
AC3
SOFTWARE
TYR A:121 , PRO A:122 , ASP A:123 , HOH A:935
BINDING SITE FOR RESIDUE CL A 403
04
AC4
SOFTWARE
GLU A:169 , ARG A:268 , HOH A:1015
BINDING SITE FOR RESIDUE CL A 404
05
AC5
SOFTWARE
TYR A:232 , PRO A:233 , SER A:234 , HOH A:827 , HOH A:885
BINDING SITE FOR RESIDUE CL A 405
06
AC6
SOFTWARE
ARG A:265 , HOH A:746 , TYR B:51 , ALA B:208 , OXD B:408
BINDING SITE FOR RESIDUE CL A 406
07
AC7
SOFTWARE
LEU A:47 , TYR A:51 , PHE A:212 , TYR A:317 , HOH A:597 , HOH A:750 , HOH A:777 , HOH A:1059
BINDING SITE FOR RESIDUE OXD A 407
08
AC8
SOFTWARE
GLU B:19 , HIS B:188 , ASP B:314 , HOH B:503 , HOH B:559 , HOH B:1045
BINDING SITE FOR RESIDUE CA B 401
09
AC9
SOFTWARE
GLU B:169 , ARG B:268 , HOH B:867
BINDING SITE FOR RESIDUE CL B 402
10
BC1
SOFTWARE
ARG B:262 , HOH B:836
BINDING SITE FOR RESIDUE CL B 403
11
BC2
SOFTWARE
ASP B:41 , GLN B:162 , PRO B:193 , ASP B:194 , HOH B:804 , HOH B:978 , HOH B:1047
BINDING SITE FOR RESIDUE GOL B 404
12
BC3
SOFTWARE
HOH A:653 , ARG B:58
BINDING SITE FOR RESIDUE CL B 405
13
BC4
SOFTWARE
ARG B:141 , HOH B:652 , HOH B:1044 , TYR C:121 , PRO C:122 , ASP C:123
BINDING SITE FOR RESIDUE CL B 406
14
BC5
SOFTWARE
LYS B:274 , THR B:275
BINDING SITE FOR RESIDUE CL B 407
15
BC6
SOFTWARE
CL A:406 , HOH A:1061 , LEU B:47 , TYR B:51 , HIS B:188 , PHE B:212 , TYR B:317 , HOH B:559 , HOH B:655 , HOH B:709 , HOH B:1045
BINDING SITE FOR RESIDUE OXD B 408
16
BC7
SOFTWARE
GLU C:19 , HIS C:188 , ASP C:314 , HOH C:506 , HOH C:567 , HOH C:1049
BINDING SITE FOR RESIDUE CA C 401
17
BC8
SOFTWARE
TYR C:51 , GLY C:207 , ALA C:208 , OXD C:406 , ARG D:265 , HOH D:835
BINDING SITE FOR RESIDUE CL C 402
18
BC9
SOFTWARE
ARG C:58 , HOH D:640
BINDING SITE FOR RESIDUE CL C 403
19
CC1
SOFTWARE
GLU C:168 , GLU C:169 , ARG C:268
BINDING SITE FOR RESIDUE CL C 404
20
CC2
SOFTWARE
ARG C:262
BINDING SITE FOR RESIDUE CL C 405
21
CC3
SOFTWARE
LEU C:47 , TYR C:51 , HIS C:188 , PHE C:212 , TYR C:317 , CL C:402 , HOH C:567 , HOH C:704 , HOH C:791 , HOH C:1049 , HOH D:710
BINDING SITE FOR RESIDUE OXD C 406
22
CC4
SOFTWARE
GLU D:19 , HIS D:188 , ASP D:314 , HOH D:511 , HOH D:594 , HOH D:971
BINDING SITE FOR RESIDUE CA D 401
23
CC5
SOFTWARE
ARG C:265 , TYR D:51 , ALA D:208 , HOH D:816
BINDING SITE FOR RESIDUE CL D 402
24
CC6
SOFTWARE
TYR D:121 , PRO D:122 , ASP D:123
BINDING SITE FOR RESIDUE CL D 403
25
CC7
SOFTWARE
LEU D:47 , TYR D:51 , HIS D:188 , PHE D:212 , TYR D:317 , HOH D:594 , HOH D:604 , HOH D:807 , HOH D:971
BINDING SITE FOR RESIDUE OXD D 404
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (548 KB)
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Biol.Unit 1 (275 KB)
Header - Biol.Unit 1
Biol.Unit 2 (272 KB)
Header - Biol.Unit 2
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