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4IN7
Asym. Unit
Info
Asym.Unit (165 KB)
Biol.Unit 1 (152 KB)
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(1)
Title
:
(M)L214N MUTANT OF THE RHODOBACTER SPHAEROIDES REACTION CENTER
Authors
:
R. G. Saer, A. Hardjasa, M. E. P. Murphy, J. T. Beatty
Date
:
04 Jan 13 (Deposition) - 05 Jun 13 (Release) - 05 Jun 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.85
Chains
:
Asym. Unit : H,L,M
Biol. Unit 1: H,L,M (1x)
Keywords
:
Electron Transfer, Chromatophore, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. G. Saer, A. Hardjasa, F. I. Rosell, A. G. Mauk, M. E. Murphy, J. T. Beatty
Role Of Rhodobacter Sphaeroides Photosynthetic Reaction Center Residue M214 In The Composition, Absorbance Properties, And Conformations Of H(A) And B(A) Cofactors.
Biochemistry V. 52 2206 2013
[
close entry info
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Hetero Components
(14, 30)
Info
All Hetero Components
01a: BACTERIOCHLOROPHYLL A (BCLa)
01b: BACTERIOCHLOROPHYLL A (BCLb)
01c: BACTERIOCHLOROPHYLL A (BCLc)
01d: BACTERIOCHLOROPHYLL A (BCLd)
02a: BACTERIOPHEOPHYTIN A (BPHa)
02b: BACTERIOPHEOPHYTIN A (BPHb)
03a: CARDIOLIPIN (CDLa)
04a: FE (III) ION (FEa)
05a: NONADEC-10-ENOIC ACID 2-[3,4-DIHYD... (GGDa)
06a: GLYCEROL (GOLa)
06b: GLYCEROL (GOLb)
06c: GLYCEROL (GOLc)
06d: GLYCEROL (GOLd)
06e: GLYCEROL (GOLe)
06f: GLYCEROL (GOLf)
06g: GLYCEROL (GOLg)
07a: HEPTANE-1,2,3-TRIOL (HTOa)
07b: HEPTANE-1,2,3-TRIOL (HTOb)
08a: POTASSIUM ION (Ka)
09a: LAURYL DIMETHYLAMINE-N-OXIDE (LDAa)
09b: LAURYL DIMETHYLAMINE-N-OXIDE (LDAb)
09c: LAURYL DIMETHYLAMINE-N-OXIDE (LDAc)
09d: LAURYL DIMETHYLAMINE-N-OXIDE (LDAd)
09e: LAURYL DIMETHYLAMINE-N-OXIDE (LDAe)
10a: MAGNESIUM ION (MGa)
11a: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHO... (PC1a)
12a: PHOSPHATE ION (PO4a)
13a: SPHEROIDENE (SPOa)
14a: UBIQUINONE-10 (U10a)
14b: UBIQUINONE-10 (U10b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BCL
4
Ligand/Ion
BACTERIOCHLOROPHYLL A
2
BPH
2
Ligand/Ion
BACTERIOPHEOPHYTIN A
3
CDL
1
Ligand/Ion
CARDIOLIPIN
4
FE
1
Ligand/Ion
FE (III) ION
5
GGD
1
Ligand/Ion
NONADEC-10-ENOIC ACID 2-[3,4-DIHYDROXY-6-HYDROXYMETHYL-5-(3,4,5-TRIHYDROXY-6-HYDROXYMETHYL-TETRAHYDRO-PYRAN-2-YLOXY)-TETRAHYDRO-PYRAN-2-YLOXY]-1-OCTADEC-9-ENOYLOXYMETHYL-ETHYL ESTER
6
GOL
7
Ligand/Ion
GLYCEROL
7
HTO
2
Ligand/Ion
HEPTANE-1,2,3-TRIOL
8
K
1
Ligand/Ion
POTASSIUM ION
9
LDA
5
Ligand/Ion
LAURYL DIMETHYLAMINE-N-OXIDE
10
MG
1
Ligand/Ion
MAGNESIUM ION
11
PC1
1
Ligand/Ion
1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
12
PO4
1
Ligand/Ion
PHOSPHATE ION
13
SPO
1
Ligand/Ion
SPHEROIDENE
14
U10
2
Ligand/Ion
UBIQUINONE-10
[
close Hetero Component info
]
Sites
(27, 27)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA H:25
BINDING SITE FOR RESIDUE GOL H 301
02
AC2
SOFTWARE
GGD H:307
BINDING SITE FOR RESIDUE GOL H 302
03
AC3
SOFTWARE
TRP H:21 , GOL L:311
BINDING SITE FOR RESIDUE GOL H 303
04
AC4
SOFTWARE
THR H:63 , PHE H:64 , GOL H:306 , ALA L:198 , ASN L:199 , PRO L:200
BINDING SITE FOR RESIDUE GOL H 304
05
AC5
SOFTWARE
MET H:134 , ALA H:137 , PHE H:140
BINDING SITE FOR RESIDUE K H 305
06
AC6
SOFTWARE
GLU H:34 , LYS H:62 , GOL H:304 , ASN L:199 , CDL M:409
BINDING SITE FOR RESIDUE GOL H 306
07
AC7
SOFTWARE
GLN H:32 , TYR H:40 , ASN H:52 , GLY H:54 , GOL H:302 , ALA L:1 , PRO L:28 , ARG M:253 , GLY M:257 , U10 M:407
BINDING SITE FOR RESIDUE GGD H 307
08
AC8
SOFTWARE
TYR L:128 , PHE L:146 , HIS L:153 , BCL L:306 , PHE M:197 , GLY M:203 , ILE M:206 , ALA M:207 , TYR M:210 , GLY M:211 , ASN M:214 , BCL M:402 , LDA M:403 , BPH M:412
BINDING SITE FOR RESIDUE BCL L 301
09
AC9
SOFTWARE
SER L:178 , U10 L:305
BINDING SITE FOR RESIDUE LDA L 304
10
BC1
SOFTWARE
THR L:182 , LEU L:189 , HIS L:190 , LEU L:193 , GLU L:212 , ASP L:213 , PHE L:216 , TYR L:222 , SER L:223 , ILE L:224 , GLY L:225 , THR L:226 , ILE L:229 , LDA L:304 , LEU M:47 , LDA M:404 , PC1 M:410
BINDING SITE FOR RESIDUE U10 L 305
11
BC2
SOFTWARE
PHE L:97 , ALA L:124 , ILE L:125 , ALA L:127 , LEU L:131 , VAL L:157 , THR L:160 , TYR L:162 , ASN L:166 , PHE L:167 , HIS L:168 , HIS L:173 , ALA L:176 , ILE L:177 , PHE L:180 , SER L:244 , CYS L:247 , MET L:248 , BCL L:301 , TYR M:210 , BCL M:401 , BCL M:402 , U10 M:407 , BPH M:412
BINDING SITE FOR RESIDUE BCL L 306
12
BC3
SOFTWARE
HIS H:126 , GLU L:72 , TYR L:73 , LYS L:82 , THR M:21
BINDING SITE FOR RESIDUE PO4 L 307
13
BC4
SOFTWARE
GLN L:87 , ILE L:91 , TRP L:142
BINDING SITE FOR RESIDUE HTO L 308
14
BC5
SOFTWARE
GLY L:77 , ALA L:78 , LEU L:80
BINDING SITE FOR RESIDUE GOL L 310
15
BC6
SOFTWARE
GOL H:303 , GLN L:62 , LDA M:403
BINDING SITE FOR RESIDUE GOL L 311
16
BC7
SOFTWARE
HIS L:168 , MET L:174 , ILE L:177 , SER L:178 , THR L:182 , BCL L:306 , MET M:122 , ILE M:179 , HIS M:182 , LEU M:183 , THR M:186 , BCL M:402 , BPH M:406 , SPO M:408
BINDING SITE FOR RESIDUE BCL M 401
17
BC8
SOFTWARE
VAL L:157 , TYR L:162 , BCL L:301 , BCL L:306 , LEU M:156 , LEU M:160 , THR M:186 , ASN M:187 , PHE M:189 , SER M:190 , LEU M:196 , PHE M:197 , HIS M:202 , SER M:205 , ILE M:206 , TYR M:210 , VAL M:276 , GLY M:280 , ILE M:284 , BCL M:401 , BPH M:406 , PC1 M:410
BINDING SITE FOR RESIDUE BCL M 402
18
BC9
SOFTWARE
TRP L:151 , BCL L:301 , GOL L:311 , PRO M:200 , LEU M:204
BINDING SITE FOR RESIDUE LDA M 403
19
CC1
SOFTWARE
U10 L:305 , SER M:8
BINDING SITE FOR RESIDUE LDA M 404
20
CC2
SOFTWARE
HIS L:190 , HIS L:230 , HIS M:219 , GLU M:234 , HIS M:266
BINDING SITE FOR RESIDUE FE M 405
21
CC3
SOFTWARE
PHE L:181 , LEU L:185 , LEU L:189 , LEU L:219 , VAL M:126 , TRP M:129 , ALA M:149 , PHE M:150 , ALA M:153 , THR M:277 , BCL M:401 , BCL M:402
BINDING SITE FOR RESIDUE BPH M 406
22
CC4
SOFTWARE
GGD H:307 , GLY L:35 , TRP L:100 , BCL L:306 , HIS M:219 , THR M:222 , ALA M:248 , ALA M:249 , TRP M:252 , MET M:256 , ASN M:259 , ALA M:260 , ILE M:265
BINDING SITE FOR RESIDUE U10 M 407
23
CC5
SOFTWARE
PHE M:67 , ILE M:70 , GLY M:71 , TRP M:75 , PHE M:105 , SER M:119 , MET M:122 , TRP M:157 , GLY M:161 , TRP M:171 , VAL M:175 , HIS M:182 , BCL M:401
BINDING SITE FOR RESIDUE SPO M 408
24
CC6
SOFTWARE
ALA H:16 , ILE H:22 , PHE H:23 , TYR H:30 , GOL H:306 , ASN L:199 , PRO L:200 , GLY M:143 , LYS M:144 , HIS M:145 , TRP M:148 , TRP M:155 , ARG M:267 , TRP M:271
BINDING SITE FOR RESIDUE CDL M 409
25
CC7
SOFTWARE
VAL L:220 , U10 L:305 , SER M:30 , GLY M:31 , BCL M:402
BINDING SITE FOR RESIDUE PC1 M 410
26
CC8
SOFTWARE
ASN M:214 , BPH M:412
BINDING SITE FOR RESIDUE MG M 411
27
CC9
SOFTWARE
ALA L:42 , ALA L:96 , PHE L:97 , TRP L:100 , GLU L:104 , ILE L:117 , PHE L:121 , SER L:237 , LEU L:238 , VAL L:241 , BCL L:301 , BCL L:306 , TYR M:210 , ALA M:213 , ASN M:214 , TRP M:252 , MG M:411
BINDING SITE FOR RESIDUE BPH M 412
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 4)
Info
All SCOP Domains
1a: SCOP_d4in7h2 (H:36-250)
2a: SCOP_d4in7l_ (L:)
3a: SCOP_d4in7m_ (M:)
4a: SCOP_d4in7h1 (H:11-35)
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Classes
(
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(
)
Folds
(
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(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
PRC-barrel domain
(113)
Superfamily
:
PRC-barrel domain
(113)
Family
:
Photosynthetic reaction centre, H-chain, cytoplasmic domain
(108)
Protein domain
:
Photosynthetic reaction centre
(98)
Rhodobacter sphaeroides [TaxId: 1063]
(82)
1a
d4in7h2
H:36-250
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Bacterial photosystem II reaction centre, L and M subunits
(187)
Superfamily
:
Bacterial photosystem II reaction centre, L and M subunits
(187)
Family
:
Bacterial photosystem II reaction centre, L and M subunits
(187)
Protein domain
:
L (light) subunit
(70)
Rhodobacter sphaeroides [TaxId: 1063]
(59)
2a
d4in7l_
L:
Protein domain
:
M (medium) subunit
(70)
Rhodobacter sphaeroides [TaxId: 1063]
(59)
3a
d4in7m_
M:
Fold
:
Single transmembrane helix
(568)
Superfamily
:
Photosystem II reaction centre subunit H, transmembrane region
(108)
Family
:
Photosystem II reaction centre subunit H, transmembrane region
(98)
Protein domain
:
Photosystem II reaction centre subunit H, transmembrane region
(98)
Rhodobacter sphaeroides [TaxId: 1063]
(82)
4a
d4in7h1
H:11-35
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
[
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]
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Protein & NOT Site
Protein & NOT PROSITE
Chain H
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Chain M
Asymmetric Unit 1
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