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4IMG
Asym. Unit
Info
Asym.Unit (207 KB)
Biol.Unit 1 (398 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PASTEURELLA MULTOCIDA N-ACETYL-D-NEURAMINIC ACID LYASE K164 MUTANT COMPLEXED WITH N-GLYCOLYLNEURAMINIC ACID
Authors
:
A. J. Fisher, N. Huynh
Date
:
02 Jan 13 (Deposition) - 06 Nov 13 (Release) - 11 Dec 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Tim Barrel, Schiff Base, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Huynh, A. Aye, Y. Li, H. Yu, H. Cao, V. K. Tiwari, D. W. Shin, X. Chen, A. J. Fisher
Structural Basis For Substrate Specificity And Mechanism Of N-Acetyl-D-Neuraminic Acid Lyase From Pasteurella Multocida
Biochemistry V. 52 8570 2013
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Hetero Components
(2, 10)
Info
All Hetero Components
1a: 1-ETHOXY-2-(2-METHOXYETHOXY)ETHANE (ME2a)
1b: 1-ETHOXY-2-(2-METHOXYETHOXY)ETHANE (ME2b)
1c: 1-ETHOXY-2-(2-METHOXYETHOXY)ETHANE (ME2c)
1d: 1-ETHOXY-2-(2-METHOXYETHOXY)ETHANE (ME2d)
1e: 1-ETHOXY-2-(2-METHOXYETHOXY)ETHANE (ME2e)
1f: 1-ETHOXY-2-(2-METHOXYETHOXY)ETHANE (ME2f)
1g: 1-ETHOXY-2-(2-METHOXYETHOXY)ETHANE (ME2g)
1h: 1-ETHOXY-2-(2-METHOXYETHOXY)ETHANE (ME2h)
2a: 3,5-DIDEOXY-5-[(HYDROXYACETYL)AMIN... (NGFa)
2b: 3,5-DIDEOXY-5-[(HYDROXYACETYL)AMIN... (NGFb)
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No.
Name
Count
Type
Full Name
1
ME2
8
Ligand/Ion
1-ETHOXY-2-(2-METHOXYETHOXY)ETHANE
2
NGF
2
Ligand/Ion
3,5-DIDEOXY-5-[(HYDROXYACETYL)AMINO]-D-GLYCERO-D-GALACTO-NON-2-ULOSONIC ACID
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:10 , GLY A:46 , SER A:47 , THR A:48 , TYR A:136 , ILE A:138 , PHE A:140 , THR A:166 , GLY A:188 , PHE A:189 , ASP A:190 , GLU A:191 , GLY A:206 , SER A:207 , LEU A:250 , TYR A:251 , HOH A:833
BINDING SITE FOR RESIDUE NGF A 501
02
AC2
SOFTWARE
LYS A:112 , PHE A:140 , LEU A:141 , GLY A:143 , HOH A:779 , HOH A:790 , HOH A:892 , LYS B:112 , PHE B:140 , GLY B:143
BINDING SITE FOR RESIDUE ME2 A 502
03
AC3
SOFTWARE
THR A:129 , GLY A:130 , LYS A:159 , HOH A:841
BINDING SITE FOR RESIDUE ME2 A 503
04
AC4
SOFTWARE
HIS A:120 , GLU A:275 , SER A:278 , HOH A:740
BINDING SITE FOR RESIDUE ME2 A 504
05
AC5
SOFTWARE
VAL A:148 , TYR A:171 , LEU A:172 , ARG A:175 , GLU A:243 , HOH A:621 , HOH A:649
BINDING SITE FOR RESIDUE ME2 A 505
06
AC6
SOFTWARE
LEU A:246 , ALA A:247 , LYS A:280
BINDING SITE FOR RESIDUE ME2 A 506
07
AC7
SOFTWARE
ALA B:10 , TYR B:43 , GLY B:46 , SER B:47 , THR B:48 , TYR B:136 , ILE B:138 , THR B:166 , GLY B:188 , PHE B:189 , ASP B:190 , GLU B:191 , GLY B:206 , SER B:207 , LEU B:250 , TYR B:251 , HOH B:799
BINDING SITE FOR RESIDUE NGF B 501
08
AC8
SOFTWARE
ILE B:146 , GLY B:147 , VAL B:148 , TYR B:171 , GLU B:243 , HOH B:663 , HOH B:926
BINDING SITE FOR RESIDUE ME2 B 502
09
AC9
SOFTWARE
ASN B:248 , SER B:277 , GLU B:279 , LYS B:280 , PHE B:283
BINDING SITE FOR RESIDUE ME2 B 503
10
BC1
SOFTWARE
ASP B:240 , PHE B:283 , GLU B:286 , LEU B:287 , LYS B:290 , TYR B:291 , HOH B:770
BINDING SITE FOR RESIDUE ME2 B 504
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d4imga_ (A:)
1b: SCOP_d4imgb_ (B:)
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Protein Domains
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Organisms
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(
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Aldolase
(457)
Family
:
Class I aldolase
(182)
Protein domain
:
automated matches
(54)
Pasteurella multocida [TaxId: 1169409]
(5)
1a
d4imga_
A:
1b
d4imgb_
B:
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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