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4ILC
Asym. Unit
Info
Asym.Unit (277 KB)
Biol.Unit 1 (269 KB)
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(1)
Title
:
THE GLIC PENTAMERIC LIGAND-GATED ION CHANNEL IN COMPLEX WITH SULFATES
Authors
:
L. Sauguet, L. Malherbe, P. J. Corringer, M. Delarue
Date
:
29 Dec 12 (Deposition) - 20 Feb 13 (Release) - 20 Mar 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.99
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C,D,E (1x)
Keywords
:
Pentameric Ligand-Gated Ion Channel, Ion Channel, Membrane, Membrane Protein, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Sauguet, F. Poitevin, S. Murail, C. Van Renterghem, G. Moraga-Cid L. Malherbe, A. W. Thompson, P. Koehl, P. J. Corringer, M. Baaden, M. Delarue
Structural Basis For Ion Permeation Mechanism In Pentameric Ligand-Gated Ion Channels.
Embo J. V. 32 728 2013
[
close entry info
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Hetero Components
(7, 52)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
1g: ACETATE ION (ACTg)
1h: ACETATE ION (ACTh)
1i: ACETATE ION (ACTi)
1j: ACETATE ION (ACTj)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
3a: DODECYL-BETA-D-MALTOSIDE (LMTa)
3b: DODECYL-BETA-D-MALTOSIDE (LMTb)
3c: DODECYL-BETA-D-MALTOSIDE (LMTc)
3d: DODECYL-BETA-D-MALTOSIDE (LMTd)
3e: DODECYL-BETA-D-MALTOSIDE (LMTe)
3f: DODECYL-BETA-D-MALTOSIDE (LMTf)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
4c: SODIUM ION (NAc)
4d: SODIUM ION (NAd)
4e: SODIUM ION (NAe)
4f: SODIUM ION (NAf)
5a: DIUNDECYL PHOSPHATIDYL CHOLINE (PLCa)
5b: DIUNDECYL PHOSPHATIDYL CHOLINE (PLCb)
5c: DIUNDECYL PHOSPHATIDYL CHOLINE (PLCc)
5d: DIUNDECYL PHOSPHATIDYL CHOLINE (PLCd)
5e: DIUNDECYL PHOSPHATIDYL CHOLINE (PLCe)
5f: DIUNDECYL PHOSPHATIDYL CHOLINE (PLCf)
5g: DIUNDECYL PHOSPHATIDYL CHOLINE (PLCg)
5h: DIUNDECYL PHOSPHATIDYL CHOLINE (PLCh)
5i: DIUNDECYL PHOSPHATIDYL CHOLINE (PLCi)
5j: DIUNDECYL PHOSPHATIDYL CHOLINE (PLCj)
6a: SULFATE ION (SO4a)
6b: SULFATE ION (SO4b)
6c: SULFATE ION (SO4c)
6d: SULFATE ION (SO4d)
6e: SULFATE ION (SO4e)
7a: UNKNOWN LIGAND (UNLa)
7b: UNKNOWN LIGAND (UNLb)
7c: UNKNOWN LIGAND (UNLc)
7d: UNKNOWN LIGAND (UNLd)
7e: UNKNOWN LIGAND (UNLe)
7f: UNKNOWN LIGAND (UNLf)
7g: UNKNOWN LIGAND (UNLg)
7h: UNKNOWN LIGAND (UNLh)
7i: UNKNOWN LIGAND (UNLi)
7j: UNKNOWN LIGAND (UNLj)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
10
Ligand/Ion
ACETATE ION
2
CL
5
Ligand/Ion
CHLORIDE ION
3
LMT
6
Ligand/Ion
DODECYL-BETA-D-MALTOSIDE
4
NA
6
Ligand/Ion
SODIUM ION
5
PLC
10
Ligand/Ion
DIUNDECYL PHOSPHATIDYL CHOLINE
6
SO4
5
Ligand/Ion
SULFATE ION
7
UNL
10
Ligand/Ion
UNKNOWN LIGAND
[
close Hetero Component info
]
Sites
(39, 39)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:77 , ILE A:131 , GLU A:181 , PHE E:42 , ARG E:105
BINDING SITE FOR RESIDUE ACT A 401
02
AC2
SOFTWARE
ARG A:118 , PHE A:121 , TYR A:194 , ILE A:198 , TYR A:254 , ASN A:307 , PHE A:315
BINDING SITE FOR RESIDUE PLC A 402
03
AC3
SOFTWARE
PHE A:78 , ARG A:85
BINDING SITE FOR RESIDUE CL A 406
04
AC4
SOFTWARE
ILE A:73 , PRO A:74 , ILE A:76 , ARG A:85 , TYR A:102
BINDING SITE FOR RESIDUE ACT A 407
05
AC5
SOFTWARE
LMT C:408 , LMT E:408
BINDING SITE FOR RESIDUE LMT A 408
06
AC6
SOFTWARE
ILE A:240 , THR B:244
BINDING SITE FOR RESIDUE LMT A 409
07
AC7
SOFTWARE
PRO A:68 , ILE A:71 , TRP A:72 , ILE A:73
BINDING SITE FOR RESIDUE NA A 410
08
AC8
SOFTWARE
ARG A:109 , SER E:29
BINDING SITE FOR RESIDUE SO4 A 411
09
AC9
SOFTWARE
PHE A:42 , ARG A:105 , ARG B:77 , ILE B:131 , GLU B:181
BINDING SITE FOR RESIDUE ACT B 401
10
BC1
SOFTWARE
ARG B:118 , PHE B:121 , TYR B:194 , TYR B:254 , ASN B:307 , PHE B:315 , PLC B:403
BINDING SITE FOR RESIDUE PLC B 402
11
BC2
SOFTWARE
PLC B:402
BINDING SITE FOR RESIDUE PLC B 403
12
BC3
SOFTWARE
PHE B:78 , ARG B:85
BINDING SITE FOR RESIDUE CL B 406
13
BC4
SOFTWARE
ILE B:73 , PRO B:74 , ILE B:76 , ARG B:85 , TYR B:102
BINDING SITE FOR RESIDUE ACT B 407
14
BC5
SOFTWARE
ALA B:237
BINDING SITE FOR RESIDUE LMT B 408
15
BC6
SOFTWARE
PRO B:68 , ILE B:71 , ILE B:73
BINDING SITE FOR RESIDUE NA B 409
16
BC7
SOFTWARE
SER A:29 , ALA B:34 , ARG B:109
BINDING SITE FOR RESIDUE SO4 B 410
17
BC8
SOFTWARE
PHE B:42 , ARG B:105 , ARG C:77 , ILE C:131 , GLU C:181
BINDING SITE FOR RESIDUE ACT C 401
18
BC9
SOFTWARE
ARG C:118 , PHE C:121 , TYR C:194 , TYR C:254 , ASN C:307 , PHE C:315
BINDING SITE FOR RESIDUE PLC C 402
19
CC1
SOFTWARE
PHE C:78 , ARG C:85
BINDING SITE FOR RESIDUE CL C 406
20
CC2
SOFTWARE
ILE C:73 , PRO C:74 , ILE C:76 , ARG C:85 , TYR C:102
BINDING SITE FOR RESIDUE ACT C 407
21
CC3
SOFTWARE
LMT A:408
BINDING SITE FOR RESIDUE LMT C 408
22
CC4
SOFTWARE
PRO C:68 , ILE C:71
BINDING SITE FOR RESIDUE NA C 410
23
CC5
SOFTWARE
SER B:29 , ARG C:109
BINDING SITE FOR RESIDUE SO4 C 411
24
CC6
SOFTWARE
PHE C:42 , ARG C:105 , ARG D:77 , ILE D:131 , GLU D:181
BINDING SITE FOR RESIDUE ACT D 401
25
CC7
SOFTWARE
ARG D:118 , PHE D:121 , TYR D:194 , TYR D:254 , ASN D:307 , PHE D:315 , PLC D:403
BINDING SITE FOR RESIDUE PLC D 402
26
CC8
SOFTWARE
PLC D:402
BINDING SITE FOR RESIDUE PLC D 403
27
CC9
SOFTWARE
PHE D:78 , ARG D:85
BINDING SITE FOR RESIDUE CL D 406
28
DC1
SOFTWARE
ILE D:73 , PRO D:74 , ILE D:76 , ARG D:85 , TYR D:102
BINDING SITE FOR RESIDUE ACT D 407
29
DC2
SOFTWARE
ILE D:233 , ALA D:237
BINDING SITE FOR RESIDUE LMT D 408
30
DC3
SOFTWARE
VAL D:5 , PRO D:68 , ILE D:71 , ILE D:73
BINDING SITE FOR RESIDUE NA D 409
31
DC4
SOFTWARE
SER C:29 , LYS C:38 , ARG D:109
BINDING SITE FOR RESIDUE SO4 D 410
32
DC5
SOFTWARE
PHE D:42 , ARG D:105 , ARG E:77 , ILE E:131 , GLU E:181
BINDING SITE FOR RESIDUE ACT E 401
33
DC6
SOFTWARE
ARG E:118 , PHE E:121 , TYR E:194 , TYR E:254 , ASN E:307 , PHE E:315 , PLC E:403
BINDING SITE FOR RESIDUE PLC E 402
34
DC7
SOFTWARE
PLC E:402
BINDING SITE FOR RESIDUE PLC E 403
35
DC8
SOFTWARE
PHE E:78 , ARG E:85
BINDING SITE FOR RESIDUE CL E 406
36
DC9
SOFTWARE
PRO E:74 , ILE E:76 , ARG E:85 , TYR E:102
BINDING SITE FOR RESIDUE ACT E 407
37
EC1
SOFTWARE
LMT A:408 , ALA D:237 , ILE E:240
BINDING SITE FOR RESIDUE LMT E 408
38
EC2
SOFTWARE
PRO E:68 , ILE E:71 , ILE E:73
BINDING SITE FOR RESIDUE NA E 409
39
EC3
SOFTWARE
SER D:29 , ARG E:109
BINDING SITE FOR RESIDUE SO4 E 410
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
View:
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
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Info
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Sorry, no Info available
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