PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
4II0
Biol. Unit 2
Info
Asym.Unit (133 KB)
Biol.Unit 1 (250 KB)
Biol.Unit 2 (128 KB)
Biol.Unit 3 (125 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF CRATABL, A TRYPSIN INHIBITOR FROM CRATAEVA TAPIA
Authors
:
D. Zhou, A. Wlodawer
Date
:
19 Dec 12 (Deposition) - 24 Jul 13 (Release) - 24 Jul 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Biol. Unit 2: A (2x)
Biol. Unit 3: B (2x)
Keywords
:
Beta-Trefoil, Serine Protease Inhibitor, Hydrolase Inhibitor
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. D. Ferreira, D. Zhou, J. G. Ferreira, M. C. Silva, R. A. Silva-Lucca, R. Mentele, E. J. Paredes-Gamero, T. C. Bertolin, M. T. Dos Santos Correia, P. M. Paiva, A. Gustchina, A. Wlodawer, M. L. Oliva
Crystal Structure Of Crataeva Tapia Bark Protein (Cratabl) And Its Effect In Human Prostate Cancer Cell Lines.
Plos One V. 8 64426 2013
[
close entry info
]
Hetero Components
(5, 24)
Info
All Hetero Components
1a: S-OXY CYSTEINE (CSXa)
1b: S-OXY CYSTEINE (CSXb)
2a: ALPHA-L-FUCOSE (FUCa)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
5f: SULFATE ION (SO4f)
5g: SULFATE ION (SO4g)
5h: SULFATE ION (SO4h)
5i: SULFATE ION (SO4i)
5j: SULFATE ION (SO4j)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CSX
2
Mod. Amino Acid
S-OXY CYSTEINE
2
FUC
2
Ligand/Ion
ALPHA-L-FUCOSE
3
GOL
4
Ligand/Ion
GLYCEROL
4
NAG
6
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
SO4
10
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: CC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:14 , SER A:15 , ARG A:16 , ARG B:116
BINDING SITE FOR RESIDUE SO4 A 201
02
AC2
SOFTWARE
ARG A:113 , GLY A:129 , SER A:130 , THR A:131
BINDING SITE FOR RESIDUE SO4 A 202
03
AC3
SOFTWARE
THR A:140 , VAL A:141 , GLY A:142 , GLY A:143 , GLY A:144
BINDING SITE FOR RESIDUE SO4 A 203
04
AC4
SOFTWARE
GLN A:40 , LEU A:41 , ARG A:42 , PHE A:43 , ARG A:46 , ARG A:146 , HOH A:332 , HOH A:415 , HOH A:434
BINDING SITE FOR RESIDUE SO4 A 204
05
AC5
SOFTWARE
HIS A:117 , LYS A:122 , ASP A:135 , PRO A:155 , HOH A:436 , HOH A:443
BINDING SITE FOR RESIDUE SO4 A 205
06
AC6
SOFTWARE
ASN A:27 , PHE A:79 , NAG A:207 , FUC A:208 , HOH A:410 , ASP B:76
BINDING SITE FOR RESIDUE NAG A 206
07
AC7
SOFTWARE
NAG A:206 , FUC A:208 , HOH A:432 , HOH A:456 , ARG B:128 , HOH B:393
BINDING SITE FOR RESIDUE NAG A 207
08
AC8
SOFTWARE
NAG A:206 , NAG A:207 , HOH A:440
BINDING SITE FOR RESIDUE FUC A 208
09
AC9
SOFTWARE
THR A:87 , THR A:104 , SER A:107 , GLY A:109 , SER A:110 , HOH A:373
BINDING SITE FOR RESIDUE GOL A 209
10
BC1
SOFTWARE
ARG A:95 , GLU A:139 , ARG A:152 , ASP A:153
BINDING SITE FOR RESIDUE GOL A 210
11
BC2
SOFTWARE
ASN A:57 , LEU A:60
BINDING SITE FOR RESIDUE NAG A 211
12
BC3
SOFTWARE
LYS A:61 , SER B:91 , SER B:92 , ILE B:93
BINDING SITE FOR RESIDUE SO4 B 201
13
CC1
SOFTWARE
ASP A:76 , ASN B:27 , PHE B:79 , HOH B:338 , HOH B:413
BINDING SITE FOR RESIDUE NAG B 208
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Asymmetric Unit 2
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (133 KB)
Header - Asym.Unit
Biol.Unit 1 (250 KB)
Header - Biol.Unit 1
Biol.Unit 2 (128 KB)
Header - Biol.Unit 2
Biol.Unit 3 (125 KB)
Header - Biol.Unit 3
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
4II0
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
