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4IBZ
Biol. Unit 4
Info
Asym.Unit (284 KB)
Biol.Unit 1 (72 KB)
Biol.Unit 2 (71 KB)
Biol.Unit 3 (70 KB)
Biol.Unit 4 (73 KB)
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(1)
Title
:
HUMAN P53 CORE DOMAIN WITH HOT SPOT MUTATION R273C AND SECOND-SITE SUPPRESSOR MUTATION T284R
Authors
:
A. Eldar, H. Rozenberg, Y. Diskin-Posner, Z. Shakked
Date
:
09 Dec 12 (Deposition) - 14 Aug 13 (Release) - 23 Oct 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.92
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Metal-Binding, Loop-Sheet-Helix Motif, Transcription, Activator, Anti-Oncogene, Apoptosis, Cell Cycle, Disease Mutation, Rescue Mutation, Tumor Suppressor, Dna Binding Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
A. Eldar, H. Rozenberg, Y. Diskin-Posner, R. Rohs, Z. Shakked
Structural Studies Of P53 Inactivation By Dna-Contact Mutations And Its Rescue By Suppressor Mutations Via Alternative Protein-Dna Interactions.
Nucleic Acids Res. V. 41 8748 2013
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Hetero Components
(2, 7)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
2p: 1,2-ETHANEDIOL (EDOp)
2q: 1,2-ETHANEDIOL (EDOq)
2r: 1,2-ETHANEDIOL (EDOr)
2s: 1,2-ETHANEDIOL (EDOs)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
EDO
6
Ligand/Ion
1,2-ETHANEDIOL
3
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(13, 13)
Info
All Sites
01: AC7 (SOFTWARE)
02: AC8 (SOFTWARE)
03: AC9 (SOFTWARE)
04: BC1 (SOFTWARE)
05: BC3 (SOFTWARE)
06: BC9 (SOFTWARE)
07: CC1 (SOFTWARE)
08: CC2 (SOFTWARE)
09: CC3 (SOFTWARE)
10: CC4 (SOFTWARE)
11: CC5 (SOFTWARE)
12: CC6 (SOFTWARE)
13: CC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC7
SOFTWARE
SER B:260 , SER B:261 , HOH B:529 , ALA D:119 , LYS D:120 , HOH D:435
BINDING SITE FOR RESIDUE EDO B 302
02
AC8
SOFTWARE
ASP B:207 , HOH B:470 , HOH B:506 , LEU D:114 , HIS D:115
BINDING SITE FOR RESIDUE EDO B 303
03
AC9
SOFTWARE
PRO B:190 , PRO B:191 , GLN B:192 , HIS B:193 , ASP B:207 , HIS B:214 , HOH B:456 , HIS D:115
BINDING SITE FOR RESIDUE EDO B 304
04
BC1
SOFTWARE
PHE B:113 , HIS B:115 , GLN B:144 , HOH B:541 , EDO D:302 , EDO D:306
BINDING SITE FOR RESIDUE EDO B 305
05
BC3
SOFTWARE
ARG B:110 , HOH B:505 , EDO D:302 , EDO D:307
BINDING SITE FOR RESIDUE ACT B 307
06
BC9
SOFTWARE
CYS D:176 , HIS D:179 , CYS D:238 , CYS D:242
BINDING SITE FOR RESIDUE ZN D 301
07
CC1
SOFTWARE
HIS B:115 , TRP B:146 , EDO B:305 , ACT B:307 , PRO D:191 , GLN D:192 , EDO D:307
BINDING SITE FOR RESIDUE EDO D 302
08
CC2
SOFTWARE
LEU D:114 , SER D:116 , CYS D:124 , THR D:125 , TYR D:126 , HOH D:434 , HOH D:527
BINDING SITE FOR RESIDUE EDO D 303
09
CC3
SOFTWARE
SER D:240 , ARG D:248 , CYS D:273
BINDING SITE FOR RESIDUE EDO D 304
10
CC4
SOFTWARE
MET D:160 , LEU D:206 , ASP D:208 , THR D:211 , ARG D:213 , HIS D:214 , SER D:215 , HOH D:442 , HOH D:520
BINDING SITE FOR RESIDUE EDO D 305
11
CC5
SOFTWARE
LEU B:114 , HIS B:115 , EDO B:305 , ASP D:207 , HOH D:432
BINDING SITE FOR RESIDUE EDO D 306
12
CC6
SOFTWARE
TRP B:146 , ACT B:307 , GLU D:180 , PRO D:191 , EDO D:302 , HOH D:526 , HOH D:541
BINDING SITE FOR RESIDUE EDO D 307
13
CC7
SOFTWARE
GLY D:187 , HOH D:450 , HOH D:482
BINDING SITE FOR RESIDUE ACT D 308
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4ibza_ (A:)
1b: SCOP_d4ibzb_ (B:)
1c: SCOP_d4ibzc_ (C:)
1d: SCOP_d4ibzd_ (D:)
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Common fold of diphtheria toxin/transcription factors/cytochrome f
(364)
Superfamily
:
p53-like transcription factors
(153)
Family
:
p53 DNA-binding domain-like
(80)
Protein domain
:
p53 tumor suppressor, DNA-binding domain
(33)
Human (Homo sapiens) [TaxId: 9606]
(32)
1a
d4ibza_
A:
1b
d4ibzb_
B:
1c
d4ibzc_
C:
1d
d4ibzd_
D:
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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Chain D
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (284 KB)
Header - Asym.Unit
Biol.Unit 1 (72 KB)
Header - Biol.Unit 1
Biol.Unit 2 (71 KB)
Header - Biol.Unit 2
Biol.Unit 3 (70 KB)
Header - Biol.Unit 3
Biol.Unit 4 (73 KB)
Header - Biol.Unit 4
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