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Getting 'Biological Unit' information from database.
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Getting 'Site' information from database.
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Getting 'Exon' information from database.
4IBL
Asym. Unit
Info
Asym.Unit (117 KB)
Biol.Unit 1 (109 KB)
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(1)
Title
:
RUBIDIUM SITES IN BLOOD COAGULATION FACTOR VIIA
Authors
:
K. Vadivel, A. Schmidt, D. Cascio, K. Padmanabhan, S. P. Bajaj
Date
:
08 Dec 12 (Deposition) - 16 Apr 14 (Release) - 16 Apr 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : H,L,T
Biol. Unit 1: H,L,T (1x)
Keywords
:
Serine Protease, Hydrolase, Tissue Factor
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Vadivel, A. Schmidt, D. Cascio, K. Padmanabhan, S. P. Bajaj
Sodium Site In Blood Coagulation Factor Viia: Absence Of Occupancy By Rubidium
To Be Published
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Hetero Components
(8, 30)
Info
All Hetero Components
1a: BENZAMIDINE (BENa)
2a: BETA-D-GLUCOSE (BGCa)
3a: CALCIUM ION (CAa)
3b: CALCIUM ION (CAb)
3c: CALCIUM ION (CAc)
3d: CALCIUM ION (CAd)
4a: GAMMA-CARBOXY-GLUTAMIC ACID (CGUa)
4b: GAMMA-CARBOXY-GLUTAMIC ACID (CGUb)
4c: GAMMA-CARBOXY-GLUTAMIC ACID (CGUc)
4d: GAMMA-CARBOXY-GLUTAMIC ACID (CGUd)
4e: GAMMA-CARBOXY-GLUTAMIC ACID (CGUe)
4f: GAMMA-CARBOXY-GLUTAMIC ACID (CGUf)
4g: GAMMA-CARBOXY-GLUTAMIC ACID (CGUg)
4h: GAMMA-CARBOXY-GLUTAMIC ACID (CGUh)
4i: GAMMA-CARBOXY-GLUTAMIC ACID (CGUi)
4j: GAMMA-CARBOXY-GLUTAMIC ACID (CGUj)
5a: CHLORIDE ION (CLa)
5b: CHLORIDE ION (CLb)
5c: CHLORIDE ION (CLc)
5d: CHLORIDE ION (CLd)
6a: ALPHA-L-FUCOSE (FUCa)
7a: MAGNESIUM ION (MGa)
7b: MAGNESIUM ION (MGb)
7c: MAGNESIUM ION (MGc)
8a: RUBIDIUM ION (RBa)
8b: RUBIDIUM ION (RBb)
8c: RUBIDIUM ION (RBc)
8d: RUBIDIUM ION (RBd)
8e: RUBIDIUM ION (RBe)
8f: RUBIDIUM ION (RBf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BEN
1
Ligand/Ion
BENZAMIDINE
2
BGC
1
Ligand/Ion
BETA-D-GLUCOSE
3
CA
4
Ligand/Ion
CALCIUM ION
4
CGU
10
Mod. Amino Acid
GAMMA-CARBOXY-GLUTAMIC ACID
5
CL
4
Ligand/Ion
CHLORIDE ION
6
FUC
1
Ligand/Ion
ALPHA-L-FUCOSE
7
MG
3
Ligand/Ion
MAGNESIUM ION
8
RB
6
Ligand/Ion
RUBIDIUM ION
[
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Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN L:49 , SER L:52 , PRO L:54 , TYR L:68
BINDING SITE FOR RESIDUE BGC L 201
02
AC2
SOFTWARE
GLY L:58 , SER L:60 , ARG T:131
BINDING SITE FOR RESIDUE FUC L 202
03
AC3
SOFTWARE
CGU L:25 , CGU L:29 , HOH L:338 , HOH L:339
BINDING SITE FOR RESIDUE MG L 203
04
AC4
SOFTWARE
CGU L:26 , CGU L:29 , RB L:205 , HOH L:342 , HOH L:344 , HOH L:422
BINDING SITE FOR RESIDUE CA L 204
05
AC5
SOFTWARE
CGU L:26 , CGU L:29 , CA L:204 , HOH L:343 , HOH L:344 , HOH L:423
BINDING SITE FOR RESIDUE RB L 205
06
AC6
SOFTWARE
CGU L:16 , CGU L:26 , HOH L:345 , HOH L:346
BINDING SITE FOR RESIDUE MG L 206
07
AC7
SOFTWARE
CGU L:7 , CGU L:16 , CGU L:20 , HOH L:427 , HOH L:428 , HOH L:429
BINDING SITE FOR RESIDUE RB L 207
08
AC8
SOFTWARE
CGU L:6 , CGU L:20 , HOH L:402 , HOH L:403 , HOH L:404
BINDING SITE FOR RESIDUE CA L 208
09
AC9
SOFTWARE
CGU L:14 , CGU L:19 , HOH L:405 , HOH L:406
BINDING SITE FOR RESIDUE MG L 209
10
BC1
SOFTWARE
ASP L:46 , GLY L:47 , GLN L:49 , ASP L:63 , GLN L:64 , HOH L:336 , HOH T:428
BINDING SITE FOR RESIDUE CA L 210
11
BC2
SOFTWARE
CGU L:16 , CGU L:20 , GLN L:21 , CGU L:26
BINDING SITE FOR RESIDUE RB L 211
12
BC3
SOFTWARE
CYS L:114 , HIS L:115 , TYR L:118
BINDING SITE FOR RESIDUE RB L 212
13
BC4
SOFTWARE
ASP H:189 , SER H:190 , LYS H:192 , SER H:195 , SER H:214 , TRP H:215 , GLY H:216 , GLY H:219 , GLY H:226 , HOH H:414
BINDING SITE FOR RESIDUE BEN H 301
14
BC5
SOFTWARE
GLU H:70 , ASP H:72 , GLU H:75 , GLU H:80 , HOH H:429 , HOH H:469
BINDING SITE FOR RESIDUE CA H 302
15
BC6
SOFTWARE
ARG H:84
BINDING SITE FOR RESIDUE CL H 303
16
BC7
SOFTWARE
ASP H:146 , CYS H:220 , THR H:221 , ALA H:221A , THR T:53 , HOH T:451
BINDING SITE FOR RESIDUE RB H 304
17
BC8
SOFTWARE
SER H:170H , PRO H:170I
BINDING SITE FOR RESIDUE RB H 305
18
BC9
SOFTWARE
ARG H:162 , SER H:232 , HOH H:417 , HOH H:545
BINDING SITE FOR RESIDUE CL H 306
19
CC1
SOFTWARE
ASN H:37 , LYS H:60C , ASN H:60D
BINDING SITE FOR RESIDUE CL H 307
20
CC2
SOFTWARE
GLU T:130 , ARG T:144 , TYR T:153 , ASN T:173
BINDING SITE FOR RESIDUE CL T 301
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Protein & NOT Site
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Chain H
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Chain T
Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
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Asym.Unit (117 KB)
Header - Asym.Unit
Biol.Unit 1 (109 KB)
Header - Biol.Unit 1
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