PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
4IAV
Asym. Unit
Info
Asym.Unit (138 KB)
Biol.Unit 1 (132 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
G215S, A251G, T257A, D260G, T262D MUTANT OF CARBOXYPEPTIDASE T FROM THERMOACTINOMYCES VULGARIS WITH N-SULFAMOYL-L-PHENYLALANINE
Authors
:
V. I. Timofeev, S. A. Kuznetsov, V. K. Akparov, I. P. Kuranova
Date
:
07 Dec 12 (Deposition) - 11 Dec 13 (Release) - 11 Dec 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.35
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. I. Timofeev, S. A. Kuznetsov, V. K. Akparov, I. P. Kuranova
G215S, A251G, T257A, D260G, T262D Mutant Of Carboxypeptidas T From Thermoactinomyces Vulgaris With N-Sulfamoyl-L-Phenylalanine
To Be Published
[
close entry info
]
Hetero Components
(5, 20)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
2a: PHENYLALANINE-N-SULFONAMIDE (CXAa)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
3i: GLYCEROL (GOLi)
3j: GLYCEROL (GOLj)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
5a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
5
Ligand/Ion
CALCIUM ION
2
CXA
1
Ligand/Ion
PHENYLALANINE-N-SULFONAMIDE
3
GOL
10
Ligand/Ion
GLYCEROL
4
SO4
3
Ligand/Ion
SULFATE ION
5
ZN
1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:69 , GLU A:72 , HIS A:204 , CXA A:402
BINDING SITE FOR RESIDUE ZN A 401
02
AC2
SOFTWARE
HIS A:69 , GLU A:72 , ARG A:129 , ASN A:146 , ARG A:147 , HIS A:204 , THR A:205 , LEU A:211 , GLY A:251 , TYR A:255 , ALA A:257 , GLU A:277 , ZN A:401 , HOH A:660
BINDING SITE FOR RESIDUE CXA A 402
03
AC3
SOFTWARE
SER A:7 , TYR A:9 , GLU A:14 , HOH A:570 , HOH A:676 , HOH A:755
BINDING SITE FOR RESIDUE CA A 403
04
AC4
SOFTWARE
TYR A:125 , SER A:223 , TYR A:288 , HOH A:595 , HOH A:625 , HOH A:711 , HOH A:768
BINDING SITE FOR RESIDUE GOL A 404
05
AC5
SOFTWARE
SER A:50 , ASP A:51 , GLU A:57 , GLU A:59 , HOH A:587
BINDING SITE FOR RESIDUE CA A 405
06
AC6
SOFTWARE
ASP A:56 , GLU A:57 , GLU A:61 , GLU A:104 , HOH A:685 , HOH A:686
BINDING SITE FOR RESIDUE CA A 406
07
AC7
SOFTWARE
ARG A:183 , ASN A:187 , TRP A:264 , GLN A:268 , HOH A:607 , HOH A:654
BINDING SITE FOR RESIDUE SO4 A 407
08
AC8
SOFTWARE
VAL A:16 , ASN A:20 , ASN A:25 , LYS A:32 , TRP A:45 , HOH A:548
BINDING SITE FOR RESIDUE SO4 A 408
09
AC9
SOFTWARE
GLY A:193 , LYS A:194 , GLN A:195 , HIS A:269 , HOH A:596 , HOH A:637 , HOH A:751
BINDING SITE FOR RESIDUE GOL A 409
10
BC1
SOFTWARE
LYS A:126 , SER A:127 , TRP A:128 , LYS A:152 , GLU A:166 , HOH A:635
BINDING SITE FOR RESIDUE GOL A 410
11
BC2
SOFTWARE
SER A:34 , GLY A:36 , LYS A:37 , GLU A:43 , HOH A:593 , HOH A:790
BINDING SITE FOR RESIDUE GOL A 411
12
BC3
SOFTWARE
HIS A:10 , LYS A:18 , HOH A:682
BINDING SITE FOR RESIDUE GOL A 412
13
BC4
SOFTWARE
LYS A:48 , TYR A:106 , HOH A:575
BINDING SITE FOR RESIDUE GOL A 413
14
BC5
SOFTWARE
GLY A:137 , SER A:138 , SER A:139 , TYR A:140 , ARG A:171 , SER A:172 , HOH A:544 , HOH A:602
BINDING SITE FOR RESIDUE GOL A 414
15
BC6
SOFTWARE
PRO A:3 , SER A:4 , TYR A:5 , HOH A:681 , HOH A:743
BINDING SITE FOR RESIDUE GOL A 415
16
BC7
SOFTWARE
GLU A:303 , HOH A:599 , HOH A:706
BINDING SITE FOR RESIDUE GOL A 416
17
BC8
SOFTWARE
TYR A:5 , ASP A:291 , GLU A:292 , HOH A:591 , HOH A:753 , HOH A:754 , HOH A:762
BINDING SITE FOR RESIDUE CA A 417
18
BC9
SOFTWARE
TYR A:206 , SER A:207
BINDING SITE FOR RESIDUE SO4 A 418
19
CC1
SOFTWARE
SER A:139 , TYR A:140 , HOH A:787 , HOH A:788
BINDING SITE FOR RESIDUE GOL A 419
20
CC2
SOFTWARE
ASP A:51 , GLU A:57 , GLU A:59 , ASN A:101 , HOH A:756 , HOH A:757
BINDING SITE FOR RESIDUE CA A 420
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d4iava_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Phosphorylase/hydrolase-like
(558)
Superfamily
:
Zn-dependent exopeptidases
(214)
Family
:
Carboxypeptidase T
(12)
Protein domain
:
Carboxypeptidase T
(12)
Thermoactinomyces vulgaris [TaxId: 2026]
(12)
1a
d4iava_
A:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (138 KB)
Header - Asym.Unit
Biol.Unit 1 (132 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
4IAV
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
