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4IA6
Biol. Unit 1
Info
Asym.Unit (423 KB)
Biol.Unit 1 (413 KB)
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(1)
Title
:
HYDRATASE FROM LACTOBACILLUS ACIDOPHILUS IN A LIGAND BOUND FORM (LA LAH)
Authors
:
S. Khoshnevis, P. Neumann, R. Ficner
Date
:
06 Dec 12 (Deposition) - 27 Mar 13 (Release) - 07 Aug 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Conjugated Linoleic Acid, Cla, Mcra, Rossmann Fold, Fad Binding, Hydratase, Fatty Acid, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Volkov, S. Khoshnevis, P. Neumann, C. Herrfurth, D. Wohlwend, R. Ficner, I. Feussner
Crystal Structure Analysis Of A Fatty Acid Double-Bond Hydratase From Lactobacillus Acidophilus
Acta Crystallogr. , Sect. D V. 69 648 2013
[
close entry info
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Hetero Components
(8, 26)
Info
All Hetero Components
1a: LINOLEIC ACID (EICa)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
3a: POTASSIUM ION (Ka)
3b: POTASSIUM ION (Kb)
4a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
4b: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESb)
4c: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESc)
5a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
5b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
5c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
5d: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDd)
5e: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDe)
6a: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDa)
7a: SODIUM ION (NAa)
7b: SODIUM ION (NAb)
8a: NITRATE ION (NO3a)
9a: PHOSPHATE ION (PO4a)
9b: PHOSPHATE ION (PO4b)
9c: PHOSPHATE ION (PO4c)
9d: PHOSPHATE ION (PO4d)
10a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EIC
1
Ligand/Ion
LINOLEIC ACID
2
GOL
10
Ligand/Ion
GLYCEROL
3
K
-1
Ligand/Ion
POTASSIUM ION
4
MES
3
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
5
MPD
5
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
6
MRD
1
Ligand/Ion
(4R)-2-METHYLPENTANE-2,4-DIOL
7
NA
-1
Ligand/Ion
SODIUM ION
8
NO3
1
Ligand/Ion
NITRATE ION
9
PO4
4
Ligand/Ion
PHOSPHATE ION
10
TRS
1
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
[
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]
Sites
(29, 29)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:184 , TRP A:343 , TYR A:411 , HOH A:732 , HOH A:1023
BINDING SITE FOR RESIDUE MRD A 601
02
AC2
SOFTWARE
THR A:184 , MET A:185 , TRP A:343 , TYR A:411
BINDING SITE FOR RESIDUE MPD A 602
03
AC3
SOFTWARE
GLU A:82 , MET A:83 , MET A:185 , PHE A:186 , PHE A:204 , HIS A:207 , LEU A:217
BINDING SITE FOR RESIDUE MPD A 603
04
AC4
SOFTWARE
VAL A:76 , GLY A:79 , SER A:346 , TRP A:409 , TYR A:411 , MET A:465 , HOH A:1145
BINDING SITE FOR RESIDUE GOL A 604
05
AC5
SOFTWARE
ASN A:309 , LEU A:338 , HOH A:784 , HOH A:877 , HOH A:1230
BINDING SITE FOR RESIDUE GOL A 605
06
AC6
SOFTWARE
THR A:502 , ARG A:503 , GLU A:532 , VAL A:533 , TYR A:538 , ARG B:541 , GOL B:604
BINDING SITE FOR RESIDUE GOL A 606
07
AC7
SOFTWARE
GLY A:31 , LEU A:32 , ALA A:33 , THR A:288 , TYR A:471 , GLY A:495 , ASN A:496 , THR A:508 , THR A:509 , SER A:512 , HOH A:786 , HOH A:1179
BINDING SITE FOR RESIDUE GOL A 607
08
AC8
SOFTWARE
ILE A:153 , MET A:154 , ILE A:205 , MET A:550 , HOH A:1283
BINDING SITE FOR RESIDUE EIC A 608
09
AC9
SOFTWARE
HIS A:206 , ILE A:208 , ASP A:209 , ARG A:545 , HOH A:999
BINDING SITE FOR RESIDUE NA A 609
10
BC1
SOFTWARE
SER A:96 , ALA A:105 , SER A:106 , HOH A:1280
BINDING SITE FOR RESIDUE PO4 A 610
11
BC2
SOFTWARE
ILE A:153 , MET A:202 , ILE A:537 , TYR A:538 , HOH A:1028 , ILE B:540 , LEU B:584
BINDING SITE FOR RESIDUE MPD A 611
12
BC3
SOFTWARE
GLN A:301 , ASN A:302 , LYS A:432 , SER A:454 , GLU A:455 , HOH A:1284
BINDING SITE FOR RESIDUE GOL A 612
13
BC4
SOFTWARE
SER A:4 , ASN A:5 , GLU A:532 , HOH A:959 , ARG B:541
BINDING SITE FOR RESIDUE GOL A 613
14
BC5
SOFTWARE
PHE A:11 , ASP A:13 , SER B:106 , ASP B:109 , HOH B:995
BINDING SITE FOR RESIDUE NA A 614
15
BC6
SOFTWARE
ALA A:18 , GLY A:19 , VAL A:20 , ASP A:21 , HOH A:1229 , HOH A:1327 , GLU B:50
BINDING SITE FOR RESIDUE MES A 615
16
BC7
SOFTWARE
ASN A:129 , ASP A:383 , TYR A:440 , HIS A:441
BINDING SITE FOR RESIDUE PO4 A 616
17
BC8
SOFTWARE
SER A:367 , ASP A:370 , LYS A:372 , VAL A:373 , ASN A:374 , HOH A:832
BINDING SITE FOR RESIDUE K A 617
18
BC9
SOFTWARE
GLU B:82 , MET B:83 , MET B:185 , PHE B:186 , PHE B:204 , HIS B:207 , LEU B:217
BINDING SITE FOR RESIDUE MPD B 601
19
CC1
SOFTWARE
LYS B:365 , ARG B:366 , SER B:367 , PRO B:445 , GLU B:446 , SER B:447 , HOH B:906 , HOH B:983 , HOH B:1175
BINDING SITE FOR RESIDUE MES B 602
20
CC2
SOFTWARE
ASN B:420 , TYR B:440 , HOH B:946 , HOH B:1035 , HOH B:1313
BINDING SITE FOR RESIDUE MES B 603
21
CC3
SOFTWARE
TYR A:3 , GOL A:606 , ASN B:589
BINDING SITE FOR RESIDUE GOL B 604
22
CC4
SOFTWARE
GLY B:162 , GLU B:167
BINDING SITE FOR RESIDUE GOL B 605
23
CC5
SOFTWARE
ILE B:153
BINDING SITE FOR RESIDUE GOL B 606
24
CC6
SOFTWARE
VAL B:77 , GLY B:79 , TRP B:409 , HOH B:1258
BINDING SITE FOR RESIDUE TRS B 607
25
CC7
SOFTWARE
ARG A:541 , ASN B:5 , GLU B:532 , HOH B:898 , HOH B:1256
BINDING SITE FOR RESIDUE PO4 B 608
26
CC8
SOFTWARE
LEU B:32 , ALA B:33 , TYR B:471 , GLY B:495 , ASN B:496 , SER B:512 , HOH B:868 , HOH B:1113 , HOH B:1206
BINDING SITE FOR RESIDUE GOL B 609
27
CC9
SOFTWARE
THR B:184 , MET B:185 , ALA B:187 , TRP B:409 , TYR B:411 , HOH B:712 , HOH B:1209
BINDING SITE FOR RESIDUE MPD B 611
28
DC1
SOFTWARE
THR B:502 , ARG B:503 , GLU B:532 , VAL B:533 , HOH B:708 , HOH B:1073 , HOH B:1085
BINDING SITE FOR RESIDUE PO4 B 612
29
DC2
SOFTWARE
SER B:367 , ASP B:370 , LYS B:372 , VAL B:373 , ASN B:374 , HOH B:736
BINDING SITE FOR RESIDUE K B 613
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
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Sorry, no Info available
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Atom Selection
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Protein & NOT Site
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Asymmetric Unit 1
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select residue range 5 to 10 in chain 'A'
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