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4I9B
Asym. Unit
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Asym.Unit (176 KB)
Biol.Unit 1 (169 KB)
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(1)
Title
:
STRUCTURE OF AMINOALDEHYDE DEHYDROGENASE 1 FROM SOLANUM LYCOPERSIUM (SLAMADH1) WITH A THIOHEMIACETAL INTERMEDIATE
Authors
:
S. Morera, A. Vigouroux, D. Kopecny
Date
:
05 Dec 12 (Deposition) - 20 Feb 13 (Release) - 01 Jan 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Aldh10 Family Fold, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Kopecny, R. Koncitikova, M. Tylichova, A. Vigouroux, H. Moskalikova, M. Soural, M. Sebela, S. Morera
Plant Aldh10 Family: Identifying Critical Residues For Substrate Specificity And Trapping A Thiohemiacetal Intermediate.
J. Biol. Chem. V. 288 9491 2013
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Hetero Components
(5, 9)
Info
All Hetero Components
1a: (2-HYDROXYETHOXY)ACETALDEHYDE (1KAa)
1b: (2-HYDROXYETHOXY)ACETALDEHYDE (1KAb)
2a: 1,2-ETHANEDIOL (EDOa)
4a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
4b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
5a: DI(HYDROXYETHYL)ETHER (PEGa)
5b: DI(HYDROXYETHYL)ETHER (PEGb)
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No.
Name
Count
Type
Full Name
1
1KA
2
Ligand/Ion
(2-HYDROXYETHOXY)ACETALDEHYDE
2
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
3
NA
2
Ligand/Ion
SODIUM ION
4
NAD
2
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
5
PEG
2
Ligand/Ion
DI(HYDROXYETHYL)ETHER
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ILE A:158 , THR A:159 , TRP A:161 , LYS A:185 , PRO A:186 , SER A:187 , GLU A:188 , GLY A:218 , GLY A:222 , GLY A:223 , PHE A:236 , GLY A:238 , SER A:239 , THR A:242 , ILE A:246 , HOH A:753 , HOH A:873
BINDING SITE FOR RESIDUE NAD A 601
2
AC2
SOFTWARE
ILE A:31 , ASP A:99 , LEU A:189 , HOH A:778 , HOH A:866
BINDING SITE FOR RESIDUE NA A 602
3
AC3
SOFTWARE
THR A:382 , ASP A:383 , VAL A:384 , VAL A:402 , THR A:404 , HOH A:832
BINDING SITE FOR RESIDUE PEG A 603
4
AC4
SOFTWARE
TYR B:143
BINDING SITE FOR RESIDUE EDO A 604
5
AC5
SOFTWARE
ASN A:162 , TYR A:163 , CYS A:295 , SER A:296
BINDING SITE FOR RESIDUE 1KA A 605
6
AC6
SOFTWARE
ILE B:158 , THR B:159 , TRP B:161 , LYS B:185 , PRO B:186 , SER B:187 , GLU B:188 , GLY B:218 , GLY B:222 , GLY B:223 , PHE B:236 , GLY B:238 , SER B:239 , THR B:242 , ILE B:246 , HOH B:840 , HOH B:970 , HOH B:971 , HOH B:979 , HOH B:994
BINDING SITE FOR RESIDUE NAD B 601
7
AC7
SOFTWARE
ILE B:31 , ASP B:99 , LEU B:189 , HOH B:733 , HOH B:857
BINDING SITE FOR RESIDUE NA B 602
8
AC8
SOFTWARE
TYR A:143 , THR B:454 , PHE B:455 , HOH B:810
BINDING SITE FOR RESIDUE PEG B 603
9
AC9
SOFTWARE
ASN B:162 , TYR B:163 , CYS B:295 , SER B:296 , TRP B:460 , HOH B:737
BINDING SITE FOR RESIDUE 1KA B 604
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d4i9ba_ (A:)
1b: SCOP_d4i9bb_ (B:)
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ALDH-like
(168)
Superfamily
:
ALDH-like
(168)
Family
:
automated matches
(88)
Protein domain
:
automated matches
(88)
Solanum lycopersicum [TaxId: 4081]
(2)
1a
d4i9ba_
A:
1b
d4i9bb_
B:
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (176 KB)
Header - Asym.Unit
Biol.Unit 1 (169 KB)
Header - Biol.Unit 1
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