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4I7S
Asym. Unit
Info
Asym.Unit (132 KB)
Biol.Unit 1 (65 KB)
Biol.Unit 2 (65 KB)
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(1)
Title
:
T4 LYSOZYME L99A/M102H WITH 3-TRIFLUOROMETHYL-5-METHYL PYRAZOLE BOUND
Authors
:
M. Merski, B. K. Shoichet
Date
:
30 Nov 12 (Deposition) - 27 Mar 13 (Release) - 24 Apr 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.69
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Merski, B. K. Shoichet
The Impact Of Introducing A Histidine Into An Apolar Cavity Site On Docking And Ligand Recognition.
J. Med. Chem. V. 56 2874 2013
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Hetero Components
(5, 15)
Info
All Hetero Components
1a: 5-METHYL-3-(TRIFLUOROMETHYL)-1H-PY... (1DVa)
1b: 5-METHYL-3-(TRIFLUOROMETHYL)-1H-PY... (1DVb)
2a: ACETATE ION (ACTa)
2b: ACETATE ION (ACTb)
2c: ACETATE ION (ACTc)
3a: BETA-MERCAPTOETHANOL (BMEa)
3b: BETA-MERCAPTOETHANOL (BMEb)
4a: 2-HYDROXYETHYL DISULFIDE (HEDa)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
5f: SULFATE ION (SO4f)
5g: SULFATE ION (SO4g)
View:
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Label:
No.
Name
Count
Type
Full Name
1
1DV
2
Ligand/Ion
5-METHYL-3-(TRIFLUOROMETHYL)-1H-PYRAZOLE
2
ACT
3
Ligand/Ion
ACETATE ION
3
BME
2
Ligand/Ion
BETA-MERCAPTOETHANOL
4
HED
1
Ligand/Ion
2-HYDROXYETHYL DISULFIDE
5
SO4
7
Ligand/Ion
SULFATE ION
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ILE A:3 , ALA A:93 , ARG A:96 , CYS A:97 , ILE A:100 , HOH A:311
BINDING SITE FOR RESIDUE BME A 201
02
AC2
SOFTWARE
LEU A:84 , VAL A:87 , TYR A:88 , LEU A:91 , ALA A:99 , HIS A:102 , VAL A:111 , LEU A:118 , PHE A:153
BINDING SITE FOR RESIDUE 1DV A 202
03
AC3
SOFTWARE
ARG A:14 , LEU A:15 , LYS A:16 , HOH A:318 , HOH A:444
BINDING SITE FOR RESIDUE SO4 A 203
04
AC4
SOFTWARE
ARG A:76 , ARG A:80 , HOH A:425 , LYS B:135
BINDING SITE FOR RESIDUE SO4 A 204
05
AC5
SOFTWARE
ARG A:119 , ARG A:125
BINDING SITE FOR RESIDUE SO4 A 205
06
AC6
SOFTWARE
PHE A:114 , THR A:115 , ASN A:116 , VAL A:117 , ASN A:132 , HOH A:466
BINDING SITE FOR RESIDUE SO4 A 206
07
AC7
SOFTWARE
GLU A:5 , GLU A:64 , GLY B:51
BINDING SITE FOR RESIDUE ACT A 207
08
AC8
SOFTWARE
THR A:109 , HOH A:366 , HOH A:371 , HOH A:430 , ALA B:130 , ALA B:134 , ILE B:150 , THR B:151 , ARG B:154
BINDING SITE FOR RESIDUE HED A 208
09
AC9
SOFTWARE
CYS B:97 , ILE B:100
BINDING SITE FOR RESIDUE BME B 201
10
BC1
SOFTWARE
LEU B:84 , VAL B:87 , TYR B:88 , LEU B:91 , ALA B:99 , HIS B:102 , VAL B:111 , VAL B:117 , LEU B:118 , PHE B:153
BINDING SITE FOR RESIDUE 1DV B 202
11
BC2
SOFTWARE
ARG B:76 , ARG B:80 , HOH B:341
BINDING SITE FOR RESIDUE SO4 B 203
12
BC3
SOFTWARE
ARG B:119 , ARG B:125
BINDING SITE FOR RESIDUE SO4 B 204
13
BC4
SOFTWARE
PHE B:114 , THR B:115 , ASN B:116 , VAL B:117 , ASN B:132 , HOH B:417 , HOH B:418 , HOH B:450
BINDING SITE FOR RESIDUE SO4 B 205
14
BC5
SOFTWARE
LEU B:15
BINDING SITE FOR RESIDUE ACT B 206
15
BC6
SOFTWARE
GLY B:30 , LEU B:32 , ASP B:70 , PHE B:104 , HOH B:463
BINDING SITE FOR RESIDUE ACT B 207
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d4i7sa_ (A:)
1b: SCOP_d4i7sb_ (B:)
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Organisms
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)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Lysozyme-like
(1361)
Superfamily
:
Lysozyme-like
(1361)
Family
:
Phage lysozyme
(550)
Protein domain
:
Phage T4 lysozyme
(546)
Bacteriophage T4 [TaxId: 10665]
(546)
1a
d4i7sa_
A:
1b
d4i7sb_
B:
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (132 KB)
Header - Asym.Unit
Biol.Unit 1 (65 KB)
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