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4I50
Asym. Unit
Info
Asym.Unit (1.1 MB)
Biol.Unit 1, α-C (1.0 MB)
Biol.Unit 1 (1.0 MB)
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(1)
Title
:
CRYSTAL STRUCTURE OF TUBULIN-STATHMIN-TTL-EPOTHILONE A COMPLEX
Authors
:
A. E. Prota, K. Bargsten, D. Zurwerra, J. J. Field, J. F. Diaz, K. H. Altma M. O. Steinmetz
Date
:
28 Nov 12 (Deposition) - 23 Jan 13 (Release) - 13 Feb 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Alpha-Tubulin, Beta-Tubulin, Ligase, Gtpase, Microtubule, Stathmin, Epothilone A, Cell Cycle
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. E. Prota, K. Bargsten, D. Zurwerra, J. J. Field, J. F. Diaz, K. H. Altmann, M. O. Steinmetz
Molecular Mechanism Of Action Of Microtubule-Stabilizing Anticancer Agents.
Science V. 339 587 2013
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Hetero Components
(9, 24)
Info
All Hetero Components
1a: PHOSPHOMETHYLPHOSPHONIC ACID ADENY... (ACPa)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
3a: CHLORIDE ION (CLa)
4a: EPOTHILONE A (EPa)
5a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
5b: GUANOSINE-5'-DIPHOSPHATE (GDPb)
6a: GLYCEROL (GOLa)
6b: GLYCEROL (GOLb)
6c: GLYCEROL (GOLc)
7a: GUANOSINE-5'-TRIPHOSPHATE (GTPa)
7b: GUANOSINE-5'-TRIPHOSPHATE (GTPb)
8a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
8b: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESb)
9a: MAGNESIUM ION (MGa)
9b: MAGNESIUM ION (MGb)
9c: MAGNESIUM ION (MGc)
9d: MAGNESIUM ION (MGd)
9e: MAGNESIUM ION (MGe)
9f: MAGNESIUM ION (MGf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACP
1
Ligand/Ion
PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
2
CA
6
Ligand/Ion
CALCIUM ION
3
CL
1
Ligand/Ion
CHLORIDE ION
4
EP
1
Ligand/Ion
EPOTHILONE A
5
GDP
2
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
6
GOL
3
Ligand/Ion
GLYCEROL
7
GTP
2
Ligand/Ion
GUANOSINE-5'-TRIPHOSPHATE
8
MES
2
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
9
MG
6
Ligand/Ion
MAGNESIUM ION
[
close Hetero Component info
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Sites
(23, 23)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:10 , GLN A:11 , ALA A:12 , GLN A:15 , ASP A:98 , ALA A:99 , ALA A:100 , ASN A:101 , SER A:140 , GLY A:143 , GLY A:144 , THR A:145 , GLY A:146 , VAL A:177 , GLU A:183 , ASN A:206 , TYR A:224 , ASN A:228 , ILE A:231 , MG A:502 , HOH A:601 , HOH A:606 , HOH A:609 , HOH A:610 , HOH A:611 , HOH A:612 , LYS B:254
BINDING SITE FOR RESIDUE GTP A 501
02
AC2
SOFTWARE
GLN A:11 , GTP A:501 , HOH A:609 , HOH A:612 , LYS B:254
BINDING SITE FOR RESIDUE MG A 502
03
AC3
SOFTWARE
ASP A:39 , THR A:41 , GLY A:44 , GLU A:55 , HOH A:650
BINDING SITE FOR RESIDUE CA A 503
04
AC4
SOFTWARE
TYR A:161 , LYS A:163 , LYS A:164
BINDING SITE FOR RESIDUE CL A 504
05
AC5
SOFTWARE
HOH A:620 , HOH A:656
BINDING SITE FOR RESIDUE CA A 505
06
AC6
SOFTWARE
ARG A:105 , THR A:109 , GLY A:410 , GLU A:411 , GOL A:507 , HOH A:637 , ASP B:163 , ARG B:253 , MES B:504
BINDING SITE FOR RESIDUE GOL A 506
07
AC7
SOFTWARE
HIS A:406 , GLY A:410 , GOL A:506 , MES B:504
BINDING SITE FOR RESIDUE GOL A 507
08
AC8
SOFTWARE
GLY B:10 , GLN B:11 , CYS B:12 , GLN B:15 , SER B:140 , GLY B:143 , GLY B:144 , THR B:145 , GLY B:146 , VAL B:177 , ASP B:179 , GLU B:183 , ASN B:206 , TYR B:224 , ASN B:228 , MG B:502 , HOH B:601 , HOH B:602 , HOH B:608 , HOH B:617 , HOH B:627 , HOH B:629
BINDING SITE FOR RESIDUE GDP B 501
09
AC9
SOFTWARE
GLN B:11 , GDP B:501 , HOH B:609 , HOH B:610 , HOH B:614 , HOH C:717
BINDING SITE FOR RESIDUE MG B 502
10
BC1
SOFTWARE
GLU B:113
BINDING SITE FOR RESIDUE CA B 503
11
BC2
SOFTWARE
GOL A:506 , GOL A:507 , ARG B:158 , PRO B:162 , ASP B:163 , ARG B:164 , ASN B:197 , ASP B:199 , ARG B:253
BINDING SITE FOR RESIDUE MES B 504
12
BC3
SOFTWARE
GLY C:10 , GLN C:11 , ALA C:12 , GLN C:15 , ASP C:98 , ALA C:99 , ALA C:100 , ASN C:101 , SER C:140 , GLY C:143 , GLY C:144 , THR C:145 , GLY C:146 , VAL C:177 , GLU C:183 , ASN C:206 , TYR C:224 , ASN C:228 , ILE C:231 , MG C:502 , HOH C:613 , HOH C:614 , HOH C:620 , HOH C:622 , HOH C:647 , HOH C:684 , LYS D:254
BINDING SITE FOR RESIDUE GTP C 501
13
BC4
SOFTWARE
GLU C:71 , GTP C:501 , HOH C:613 , HOH C:620 , HOH C:622 , HOH C:646
BINDING SITE FOR RESIDUE MG C 502
14
BC5
SOFTWARE
ASP C:39 , THR C:41 , GLY C:44 , GLU C:55
BINDING SITE FOR RESIDUE CA C 503
15
BC6
SOFTWARE
GLU C:196
BINDING SITE FOR RESIDUE CA C 504
16
BC7
SOFTWARE
GLY D:10 , GLN D:11 , CYS D:12 , GLN D:15 , SER D:140 , GLY D:143 , GLY D:144 , THR D:145 , GLY D:146 , VAL D:177 , ASP D:179 , GLU D:183 , ASN D:206 , TYR D:224 , ASN D:228 , MG D:502 , HOH D:608 , HOH D:613 , HOH D:617 , HOH D:623
BINDING SITE FOR RESIDUE GDP D 501
17
BC8
SOFTWARE
GLN D:11 , ASP D:179 , GDP D:501 , HOH D:616
BINDING SITE FOR RESIDUE MG D 502
18
BC9
SOFTWARE
GLY C:410 , GLU C:411 , ARG D:158 , PRO D:162 , ASP D:163 , ARG D:164 , ASP D:199 , ARG D:253 , ARG E:112
BINDING SITE FOR RESIDUE MES D 503
19
CC1
SOFTWARE
LEU D:217 , ASP D:226 , HIS D:229 , PHE D:272 , PRO D:274 , LEU D:275 , THR D:276 , ARG D:278 , GLN D:281 , ARG D:284
BINDING SITE FOR RESIDUE EP D 504
20
CC2
SOFTWARE
LYS D:176 , VAL D:177 , PRO D:222 , THR D:223 , TYR D:224
BINDING SITE FOR RESIDUE GOL D 505
21
CC3
SOFTWARE
LYS F:74 , ILE F:148 , GLN F:183 , LYS F:184 , TYR F:185 , LEU F:186 , LYS F:198 , ASP F:200 , ARG F:202 , THR F:241 , ASN F:242 , ASP F:318 , GLU F:331 , ASN F:333 , MG F:402 , MG F:403
BINDING SITE FOR RESIDUE ACP F 401
22
CC4
SOFTWARE
ASP F:200 , ARG F:222 , ASP F:318 , ACP F:401
BINDING SITE FOR RESIDUE MG F 402
23
CC5
SOFTWARE
LYS F:74 , GLU F:331 , ASN F:333 , ACP F:401
BINDING SITE FOR RESIDUE MG F 403
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 9)
Info
All SCOP Domains
1a: SCOP_d4i50e_ (E:)
2a: SCOP_d4i50a2 (A:246-438)
2b: SCOP_d4i50b2 (B:246-440)
2c: SCOP_d4i50c2 (C:246-440)
2d: SCOP_d4i50d2 (D:246-441)
3a: SCOP_d4i50a1 (A:1-245)
3b: SCOP_d4i50b1 (B:2-245)
3c: SCOP_d4i50c1 (C:1-245)
3d: SCOP_d4i50d1 (D:2-245)
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Classes
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Folds
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(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Non-globular all-alpha subunits of globular proteins
(135)
Superfamily
:
Stathmin
(21)
Family
:
Stathmin
(21)
Protein domain
:
Stathmin 4
(21)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(21)
1a
d4i50e_
E:
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Bacillus chorismate mutase-like
(324)
Superfamily
:
Tubulin C-terminal domain-like
(76)
Family
:
Tubulin, C-terminal domain
(69)
Protein domain
:
automated matches
(19)
Cow (Bos taurus) [TaxId: 9913]
(11)
2a
d4i50a2
A:246-438
2b
d4i50b2
B:246-440
2c
d4i50c2
C:246-440
2d
d4i50d2
D:246-441
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Tubulin nucleotide-binding domain-like
(75)
Superfamily
:
Tubulin nucleotide-binding domain-like
(75)
Family
:
Tubulin, GTPase domain
(69)
Protein domain
:
automated matches
(20)
Cow (Bos taurus) [TaxId: 9913]
(11)
3a
d4i50a1
A:1-245
3b
d4i50b1
B:2-245
3c
d4i50c1
C:1-245
3d
d4i50d1
D:2-245
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Chain E
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