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4I4T
Asym. Unit
Info
Asym.Unit (1.1 MB)
Biol.Unit 1, α-C (1.1 MB)
Biol.Unit 1 (1.1 MB)
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(1)
Title
:
CRYSTAL STRUCTURE OF TUBULIN-RB3-TTL-ZAMPANOLIDE COMPLEX
Authors
:
A. E. Prota, M. O. Steinmetz
Date
:
28 Nov 12 (Deposition) - 23 Jan 13 (Release) - 20 Feb 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Alpha-Tubulin, Beta-Tubulin, Ligase, Gtpase, Stathmin, Zamanolide, Cell Cycle
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. E. Prota, K. Bargsten, D. Zurwerra, J. J. Field, J. F. Diaz, K. H. Altmann, M. O. Steinmetz
Molecular Mechanism Of Action Of Microtubule-Stabilizing Anticancer Agents.
Science V. 339 587 2013
(for further references see the
PDB file header
)
[
close entry info
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Hetero Components
(10, 26)
Info
All Hetero Components
01a: PHOSPHOMETHYLPHOSPHONIC ACID ADENY... (ACPa)
02a: CALCIUM ION (CAa)
02b: CALCIUM ION (CAb)
02c: CALCIUM ION (CAc)
02d: CALCIUM ION (CAd)
03a: CHLORIDE ION (CLa)
04a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
04b: GUANOSINE-5'-DIPHOSPHATE (GDPb)
05a: GLYCEROL (GOLa)
05b: GLYCEROL (GOLb)
05c: GLYCEROL (GOLc)
05d: GLYCEROL (GOLd)
05e: GLYCEROL (GOLe)
05f: GLYCEROL (GOLf)
05g: GLYCEROL (GOLg)
06a: GUANOSINE-5'-TRIPHOSPHATE (GTPa)
06b: GUANOSINE-5'-TRIPHOSPHATE (GTPb)
07a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
08a: MAGNESIUM ION (MGa)
08b: MAGNESIUM ION (MGb)
08c: MAGNESIUM ION (MGc)
08d: MAGNESIUM ION (MGd)
08e: MAGNESIUM ION (MGe)
08f: MAGNESIUM ION (MGf)
09a: TYROSINE (TYRa)
10a: (2Z,4E)-N-[(S)-[(1S,2E,5S,8E,10Z,1... (ZPNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACP
1
Ligand/Ion
PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
2
CA
4
Ligand/Ion
CALCIUM ION
3
CL
1
Ligand/Ion
CHLORIDE ION
4
GDP
2
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
5
GOL
7
Ligand/Ion
GLYCEROL
6
GTP
2
Ligand/Ion
GUANOSINE-5'-TRIPHOSPHATE
7
MES
1
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
8
MG
6
Ligand/Ion
MAGNESIUM ION
9
TYR
1
Mod. Amino Acid
TYROSINE
10
ZPN
1
Ligand/Ion
(2Z,4E)-N-[(S)-[(1S,2E,5S,8E,10Z,17S)-3,11-DIMETHYL-19-METHYLIDENE-7,13-DIOXO-6,21-DIOXABICYCLO[15.3.1]HENICOSA-2,8,10-TRIEN-5-YL](HYDROXY)METHYL]HEXA-2,4-DIENAMIDE
[
close Hetero Component info
]
Sites
(26, 26)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:10 , GLN A:11 , ALA A:12 , GLN A:15 , ASP A:98 , ALA A:99 , ASN A:101 , SER A:140 , GLY A:143 , GLY A:144 , THR A:145 , GLY A:146 , VAL A:177 , GLU A:183 , ASN A:206 , TYR A:224 , ASN A:228 , ILE A:231 , MG A:502 , HOH A:601 , HOH A:602 , HOH A:613 , HOH A:644 , HOH A:681 , HOH A:683 , HOH A:700 , HOH A:872 , LYS B:254
BINDING SITE FOR RESIDUE GTP A 501
02
AC2
SOFTWARE
GTP A:501 , HOH A:602 , HOH A:681 , HOH A:683 , HOH A:872
BINDING SITE FOR RESIDUE MG A 502
03
AC3
SOFTWARE
ASP A:39 , THR A:41 , GLY A:44 , GLU A:55 , HOH A:702
BINDING SITE FOR RESIDUE CA A 503
04
AC4
SOFTWARE
TYR A:161 , GLY A:162 , LYS A:163 , LYS A:164
BINDING SITE FOR RESIDUE CL A 504
05
AC5
SOFTWARE
GOL A:507 , HOH A:712 , HOH A:900 , HOH A:916 , HOH E:258
BINDING SITE FOR RESIDUE CA A 505
06
AC6
SOFTWARE
ARG A:105 , THR A:109 , GLY A:410 , GLU A:411 , HOH A:863 , HOH A:910 , MES B:507
BINDING SITE FOR RESIDUE GOL A 506
07
AC7
SOFTWARE
GLY A:162 , LYS A:163 , LYS A:164 , SER A:165 , ASP A:199 , CA A:505
BINDING SITE FOR RESIDUE GOL A 507
08
AC8
SOFTWARE
ASN A:216 , PRO A:274 , VAL A:275 , ASN A:300 , HOH A:637 , HOH A:694
BINDING SITE FOR RESIDUE GOL A 508
09
AC9
SOFTWARE
GLY B:10 , GLN B:11 , CYS B:12 , GLN B:15 , SER B:140 , GLY B:143 , GLY B:144 , THR B:145 , GLY B:146 , PRO B:173 , VAL B:177 , ASP B:179 , GLU B:183 , ASN B:206 , TYR B:224 , ASN B:228 , MG B:502 , HOH B:602 , HOH B:603 , HOH B:607 , HOH B:680 , HOH B:681 , HOH B:682 , HOH B:686 , HOH B:695
BINDING SITE FOR RESIDUE GDP B 501
10
BC1
SOFTWARE
GLN B:11 , GDP B:501 , HOH B:623 , HOH B:694 , HOH B:695 , HOH B:791 , HOH C:794
BINDING SITE FOR RESIDUE MG B 502
11
BC2
SOFTWARE
GLU B:113 , HOH B:677 , HOH B:729 , HOH B:741 , HOH B:833
BINDING SITE FOR RESIDUE CA B 503
12
BC3
SOFTWARE
ASP B:297 , SER B:298 , ARG B:308 , GOL B:505 , HOH B:738
BINDING SITE FOR RESIDUE GOL B 504
13
BC4
SOFTWARE
PHE B:296 , ARG B:308 , VAL B:335 , ASN B:339 , GOL B:504 , HOH B:802
BINDING SITE FOR RESIDUE GOL B 505
14
BC5
SOFTWARE
ARG B:401 , HOH B:696 , HOH B:723 , HOH B:798 , TYR C:262 , ASP C:431 , VAL C:435
BINDING SITE FOR RESIDUE TYR B 506
15
BC6
SOFTWARE
GOL A:506 , ARG B:158 , PRO B:162 , ASP B:163 , ARG B:164 , ASN B:197 , ASP B:199 , ARG B:253
BINDING SITE FOR RESIDUE MES B 507
16
BC7
SOFTWARE
GLY C:10 , GLN C:11 , ALA C:12 , GLN C:15 , ASP C:98 , ALA C:99 , ALA C:100 , ASN C:101 , SER C:140 , GLY C:143 , GLY C:144 , THR C:145 , GLY C:146 , VAL C:177 , GLU C:183 , ASN C:206 , TYR C:224 , ASN C:228 , ILE C:231 , MG C:502 , HOH C:676 , HOH C:771 , HOH C:773 , HOH C:779 , HOH C:791 , HOH C:839 , HOH C:951 , LYS D:254
BINDING SITE FOR RESIDUE GTP C 501
17
BC8
SOFTWARE
GTP C:501 , HOH C:771 , HOH C:791 , HOH C:839 , HOH C:949
BINDING SITE FOR RESIDUE MG C 502
18
BC9
SOFTWARE
ASP C:39 , THR C:41 , GLY C:44 , GLU C:55 , HOH C:792
BINDING SITE FOR RESIDUE CA C 503
19
CC1
SOFTWARE
GLY D:10 , GLN D:11 , CYS D:12 , GLN D:15 , SER D:140 , GLY D:143 , GLY D:144 , THR D:145 , GLY D:146 , VAL D:177 , GLU D:183 , ASN D:206 , TYR D:224 , ASN D:228 , MG D:502 , HOH D:605 , HOH D:620 , HOH D:661 , HOH D:677 , HOH D:684 , HOH D:751 , HOH D:809 , HOH D:829 , HOH D:845
BINDING SITE FOR RESIDUE GDP D 501
20
CC2
SOFTWARE
GLN D:11 , ASP D:179 , GDP D:501 , HOH D:784 , HOH D:809 , HOH D:829
BINDING SITE FOR RESIDUE MG D 502
21
CC3
SOFTWARE
LEU D:217 , HIS D:229 , ALA D:233 , PRO D:274 , THR D:276 , ARG D:278 , GLN D:281 , ARG D:284 , PRO D:360 , HOH D:686 , HOH D:708 , HOH D:743 , HOH D:837
BINDING SITE FOR RESIDUE ZPN D 503
22
CC4
SOFTWARE
ASP F:318 , ACP F:703
BINDING SITE FOR RESIDUE MG F 701
23
CC5
SOFTWARE
GLU F:331 , ASN F:333 , ACP F:703 , HOH F:802 , HOH F:936 , HOH F:955
BINDING SITE FOR RESIDUE MG F 702
24
CC6
SOFTWARE
GLU A:450 , LYS F:74 , LYS F:150 , GLN F:183 , LYS F:184 , TYR F:185 , LEU F:186 , LYS F:198 , ASP F:200 , ARG F:202 , HIS F:239 , LEU F:240 , THR F:241 , ASN F:242 , ASP F:318 , GLU F:331 , ASN F:333 , MG F:701 , MG F:702 , HOH F:979 , HOH F:981 , HOH F:983 , HOH F:1003
BINDING SITE FOR RESIDUE ACP F 703
25
CC7
SOFTWARE
TYR F:211 , ARG F:292 , MET F:296 , LEU F:378 , HIS F:379 , HIS F:380 , HOH F:812
BINDING SITE FOR RESIDUE GOL F 704
26
CC8
SOFTWARE
ARG D:311 , SER D:341 , ARG F:292 , LYS F:377 , LEU F:378 , HIS F:379
BINDING SITE FOR RESIDUE GOL F 705
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
View:
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Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 9)
Info
All SCOP Domains
1a: SCOP_d4i4te_ (E:)
2a: SCOP_d4i4ta2 (A:246-450)
2b: SCOP_d4i4tb2 (B:246-438)
2c: SCOP_d4i4tc2 (C:246-440)
2d: SCOP_d4i4td2 (D:246-441)
3a: SCOP_d4i4ta1 (A:1-245)
3b: SCOP_d4i4tb1 (B:1-245)
3c: SCOP_d4i4tc1 (C:1-245)
3d: SCOP_d4i4td1 (D:1-245)
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Non-globular all-alpha subunits of globular proteins
(135)
Superfamily
:
Stathmin
(21)
Family
:
Stathmin
(21)
Protein domain
:
Stathmin 4
(21)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(21)
1a
d4i4te_
E:
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Bacillus chorismate mutase-like
(324)
Superfamily
:
Tubulin C-terminal domain-like
(76)
Family
:
Tubulin, C-terminal domain
(69)
Protein domain
:
automated matches
(19)
Cow (Bos taurus) [TaxId: 9913]
(11)
2a
d4i4ta2
A:246-450
2b
d4i4tb2
B:246-438
2c
d4i4tc2
C:246-440
2d
d4i4td2
D:246-441
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Tubulin nucleotide-binding domain-like
(75)
Superfamily
:
Tubulin nucleotide-binding domain-like
(75)
Family
:
Tubulin, GTPase domain
(69)
Protein domain
:
automated matches
(20)
Cow (Bos taurus) [TaxId: 9913]
(11)
3a
d4i4ta1
A:1-245
3b
d4i4tb1
B:1-245
3c
d4i4tc1
C:1-245
3d
d4i4td1
D:1-245
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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