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4I3Z
Biol. Unit 1
Info
Asym.Unit (391 KB)
Biol.Unit 1 (193 KB)
Biol.Unit 2 (193 KB)
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(1)
Title
:
STRUCTURE OF PCDK2/CYCLINA BOUND TO ADP AND 2 MAGNESIUM IONS
Authors
:
D. M. Jacobsen, Z. -Q. Bao, P. J. O'Brien, C. L. Brooks, M. A. Young
Date
:
27 Nov 12 (Deposition) - 26 Dec 12 (Release) - 26 Dec 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Adp And Magnesium Binding, T160 Phosphorylation, Transferase-Cell Cycle Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
D. M. Jacobsen, Z. -Q. Bao, P. J. O'Brien, C. L. Brooks, M. A. Young
Price To Be Paid For Two-Metal Catalysis: Magnesium Ions That Accelerate Chemistry Unavoidably Limit Product Release From A Protein Kinase
J. Am. Chem. Soc. V. 134 15357 2012
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Hetero Components
(3, 7)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
3i: GLYCEROL (GOLi)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
4c: MAGNESIUM ION (MGc)
4d: MAGNESIUM ION (MGd)
5a: PHOSPHOTHREONINE (TPOa)
5b: PHOSPHOTHREONINE (TPOb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ADP
1
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
GOL
5
Ligand/Ion
GLYCEROL
4
MG
-1
Ligand/Ion
MAGNESIUM ION
5
TPO
1
Mod. Amino Acid
PHOSPHOTHREONINE
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC6 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ILE A:10 , ALA A:31 , LYS A:33 , GLU A:81 , LEU A:83 , ASP A:86 , LYS A:89 , GLN A:131 , ASN A:132 , LEU A:134 , ASP A:145 , MG A:302 , MG A:303 , GOL A:306 , HOH A:401 , HOH A:404 , HOH A:409 , HOH A:435 , HOH A:440 , HOH A:460
BINDING SITE FOR RESIDUE ADP A 301
02
AC2
SOFTWARE
ASN A:132 , ASP A:145 , ADP A:301 , HOH A:401 , HOH A:402
BINDING SITE FOR RESIDUE MG A 302
03
AC3
SOFTWARE
ASP A:145 , ADP A:301 , HOH A:403 , HOH A:404 , HOH A:413
BINDING SITE FOR RESIDUE MG A 303
04
AC4
SOFTWARE
ILE A:209 , ASP A:210 , PHE A:213 , ARG A:217 , GLU D:224 , TYR D:225 , GLU D:277
BINDING SITE FOR RESIDUE GOL A 304
05
AC5
SOFTWARE
PHE A:4 , ASN A:23 , GLU A:28 , VAL A:30 , ASP A:68 , HOH A:405 , HOH A:513
BINDING SITE FOR RESIDUE GOL A 305
06
AC6
SOFTWARE
ASP A:86 , LYS A:88 , LYS A:89 , ADP A:301
BINDING SITE FOR RESIDUE GOL A 306
07
AC7
SOFTWARE
GLN A:131
BINDING SITE FOR RESIDUE CL A 307
08
AC8
SOFTWARE
GLU B:224 , TYR B:225 , GLU B:277 , ILE C:209 , ASP C:210 , PHE C:213 , ARG C:217
BINDING SITE FOR RESIDUE GOL B 501
09
AC9
SOFTWARE
TYR B:199 , ARG B:202 , GLN B:203 , LEU B:243 , SER B:244 , MET B:246 , SER B:247
BINDING SITE FOR RESIDUE GOL B 502
10
BC6
SOFTWARE
PRO A:228 , GLN D:370 , SER D:371 , PRO D:373 , HOH D:647
BINDING SITE FOR RESIDUE GOL D 501
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d4i3zb1 (B:175-309)
1b: SCOP_d4i3zb2 (B:310-431)
1c: SCOP_d4i3zd1 (D:175-309)
1d: SCOP_d4i3zd2 (D:310-431)
2a: SCOP_d4i3za_ (A:)
2b: SCOP_d4i3zc_ (C:)
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Protein Domains
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
Cyclin-like
(137)
Superfamily
:
Cyclin-like
(137)
Family
:
Cyclin
(117)
Protein domain
:
automated matches
(10)
Mouse (Mus musculus) [TaxId: 10090]
(2)
1a
d4i3zb1
B:175-309
1b
d4i3zb2
B:310-431
1c
d4i3zd1
D:175-309
1d
d4i3zd2
D:310-431
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
Cyclin-dependent PK, CDK2
(340)
Human (Homo sapiens) [TaxId: 9606]
(336)
2a
d4i3za_
A:
2b
d4i3zc_
C:
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (391 KB)
Header - Asym.Unit
Biol.Unit 1 (193 KB)
Header - Biol.Unit 1
Biol.Unit 2 (193 KB)
Header - Biol.Unit 2
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