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4I0U
Biol. Unit 2
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Asym.Unit (602 KB)
Biol.Unit 1 (301 KB)
Biol.Unit 2 (297 KB)
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(1)
Title
:
IMPROVED STRUCTURE OF THERMOTOGA MARITIMA CORA AT 2.7 A RESOLUTION
Authors
:
N. Nordin, A. Guskov, T. Phua, N. Sahaf, Y. Xia, S. Y. Lu, H. Eshaghi, S. Es
Date
:
19 Nov 12 (Deposition) - 06 Mar 13 (Release) - 10 Sep 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A,B,C,D,E (1x)
Biol. Unit 2: F,G,H,I,J (1x)
Keywords
:
Magnesium/Cobalt Transport, Metal Transport, Membrane Protein, Cora
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Nordin, A. Guskov, T. Phua, N. Sahaf, Y. Xia, S. Y. Lu, H. Eshaghi, S. Eshaghi
Exploring The Structure And Function Of Thermotoga Maritima Cora Reveals The Mechanism Of Gating And Ion Selectivity In Co2+/Mg2+ Transport.
Biochem. J. V. 451 365 2013
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Hetero Components
(1, 10)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
1i: CHLORIDE ION (CLi)
1j: CHLORIDE ION (CLj)
1k: CHLORIDE ION (CLk)
1l: CHLORIDE ION (CLl)
1m: CHLORIDE ION (CLm)
2a: DODECYL-BETA-D-MALTOSIDE (LMTa)
2b: DODECYL-BETA-D-MALTOSIDE (LMTb)
2c: DODECYL-BETA-D-MALTOSIDE (LMTc)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
3f: MAGNESIUM ION (MGf)
3g: MAGNESIUM ION (MGg)
3h: MAGNESIUM ION (MGh)
3i: MAGNESIUM ION (MGi)
3j: MAGNESIUM ION (MGj)
3k: MAGNESIUM ION (MGk)
3l: MAGNESIUM ION (MGl)
3m: MAGNESIUM ION (MGm)
3n: MAGNESIUM ION (MGn)
3o: MAGNESIUM ION (MGo)
3p: MAGNESIUM ION (MGp)
3q: MAGNESIUM ION (MGq)
3r: MAGNESIUM ION (MGr)
3s: MAGNESIUM ION (MGs)
3t: MAGNESIUM ION (MGt)
3u: MAGNESIUM ION (MGu)
3v: MAGNESIUM ION (MGv)
3w: MAGNESIUM ION (MGw)
3x: MAGNESIUM ION (MGx)
4a: DI(HYDROXYETHYL)ETHER (PEGa)
4b: DI(HYDROXYETHYL)ETHER (PEGb)
4c: DI(HYDROXYETHYL)ETHER (PEGc)
4d: DI(HYDROXYETHYL)ETHER (PEGd)
4e: DI(HYDROXYETHYL)ETHER (PEGe)
4f: DI(HYDROXYETHYL)ETHER (PEGf)
4g: DI(HYDROXYETHYL)ETHER (PEGg)
4h: DI(HYDROXYETHYL)ETHER (PEGh)
4i: DI(HYDROXYETHYL)ETHER (PEGi)
4j: DI(HYDROXYETHYL)ETHER (PEGj)
4k: DI(HYDROXYETHYL)ETHER (PEGk)
4l: DI(HYDROXYETHYL)ETHER (PEGl)
4m: DI(HYDROXYETHYL)ETHER (PEGm)
4n: DI(HYDROXYETHYL)ETHER (PEGn)
4o: DI(HYDROXYETHYL)ETHER (PEGo)
4p: DI(HYDROXYETHYL)ETHER (PEGp)
4q: DI(HYDROXYETHYL)ETHER (PEGq)
4r: DI(HYDROXYETHYL)ETHER (PEGr)
4s: DI(HYDROXYETHYL)ETHER (PEGs)
4t: DI(HYDROXYETHYL)ETHER (PEGt)
4u: DI(HYDROXYETHYL)ETHER (PEGu)
5a: 2-(2-METHOXYETHOXY)ETHANOL (PG0a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
LMT
-1
Ligand/Ion
DODECYL-BETA-D-MALTOSIDE
3
MG
-1
Ligand/Ion
MAGNESIUM ION
4
PEG
10
Ligand/Ion
DI(HYDROXYETHYL)ETHER
5
PG0
-1
Ligand/Ion
2-(2-METHOXYETHOXY)ETHANOL
[
close Hetero Component info
]
Sites
(27, 27)
Info
All Sites
01: BC3 (SOFTWARE)
02: DC2 (SOFTWARE)
03: DC7 (SOFTWARE)
04: DC8 (SOFTWARE)
05: DC9 (SOFTWARE)
06: EC1 (SOFTWARE)
07: EC2 (SOFTWARE)
08: EC3 (SOFTWARE)
09: EC4 (SOFTWARE)
10: EC5 (SOFTWARE)
11: EC6 (SOFTWARE)
12: EC7 (SOFTWARE)
13: EC8 (SOFTWARE)
14: EC9 (SOFTWARE)
15: FC1 (SOFTWARE)
16: FC2 (SOFTWARE)
17: FC3 (SOFTWARE)
18: FC4 (SOFTWARE)
19: FC5 (SOFTWARE)
20: FC6 (SOFTWARE)
21: FC7 (SOFTWARE)
22: FC8 (SOFTWARE)
23: FC9 (SOFTWARE)
24: GC1 (SOFTWARE)
25: GC2 (SOFTWARE)
26: GC3 (SOFTWARE)
27: GC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
BC3
SOFTWARE
GLN B:74 , GLU J:197
BINDING SITE FOR RESIDUE PEG B 409
02
DC2
SOFTWARE
GLU E:197 , GLU E:201 , ASP G:71 , HOH G:535
BINDING SITE FOR RESIDUE PEG E 405
03
DC7
SOFTWARE
ASP F:179 , HOH F:501 , HOH G:501 , HOH G:502 , HOH G:503
BINDING SITE FOR RESIDUE MG F 401
04
DC8
SOFTWARE
GLU F:88 , ASP F:89 , HOH F:505 , HOH F:506 , HOH F:507 , ASP I:253
BINDING SITE FOR RESIDUE MG F 402
05
DC9
SOFTWARE
ILE F:160 , TYR F:168 , PRO G:14
BINDING SITE FOR RESIDUE CL F 403
06
EC1
SOFTWARE
ASP G:277
BINDING SITE FOR RESIDUE MG G 401
07
EC2
SOFTWARE
ASP F:253 , ASP G:89 , HOH G:504 , HOH G:505 , HOH G:506
BINDING SITE FOR RESIDUE MG G 403
08
EC3
SOFTWARE
HOH G:507 , HOH G:508 , HOH G:509 , HOH G:510 , HOH H:501
BINDING SITE FOR RESIDUE MG G 404
09
EC4
SOFTWARE
ASP G:253 , HOH G:511 , ASP H:89 , HOH H:502 , HOH H:503
BINDING SITE FOR RESIDUE MG G 405
10
EC5
SOFTWARE
ILE G:160 , ILE G:161 , TYR G:168 , HOH G:533 , PRO H:14
BINDING SITE FOR RESIDUE CL G 406
11
EC6
SOFTWARE
LYS G:9 , GLU G:88 , ASN G:92
BINDING SITE FOR RESIDUE CL G 407
12
EC7
SOFTWARE
PHE G:306 , LEU H:304 , LEU H:331
BINDING SITE FOR RESIDUE PEG G 408
13
EC8
SOFTWARE
GLN G:74 , HOH G:535
BINDING SITE FOR RESIDUE PEG G 409
14
EC9
SOFTWARE
GLU G:246
BINDING SITE FOR RESIDUE PEG G 411
15
FC1
SOFTWARE
GLU G:121 , GLN G:213
BINDING SITE FOR RESIDUE PEG G 412
16
FC2
SOFTWARE
ARG H:153 , ILE H:160 , TYR H:168 , PRO J:14
BINDING SITE FOR RESIDUE CL H 401
17
FC3
SOFTWARE
ASP H:256
BINDING SITE FOR RESIDUE PEG H 402
18
FC4
SOFTWARE
HOH F:502 , HOH F:503 , HOH F:504 , ASP I:175 , ASP I:179 , HOH I:501 , HOH I:502
BINDING SITE FOR RESIDUE MG I 401
19
FC5
SOFTWARE
HOH I:503 , HOH I:504 , HOH J:508 , HOH J:509 , HOH J:510 , HOH J:511
BINDING SITE FOR RESIDUE MG I 402
20
FC6
SOFTWARE
ASP I:89 , HOH I:505 , HOH I:506 , HOH I:507 , ASP J:253 , HOH J:512
BINDING SITE FOR RESIDUE MG I 403
21
FC7
SOFTWARE
GLN I:74
BINDING SITE FOR RESIDUE PEG I 404
22
FC8
SOFTWARE
GLY H:312 , GLY J:312 , ASN J:314
BINDING SITE FOR RESIDUE MG J 401
23
FC9
SOFTWARE
HOH H:504 , HOH H:505 , HOH J:501 , HOH J:502 , HOH J:503
BINDING SITE FOR RESIDUE MG J 402
24
GC1
SOFTWARE
ASP H:253 , ASP J:89 , HOH J:504 , HOH J:505 , HOH J:506 , HOH J:507
BINDING SITE FOR RESIDUE MG J 403
25
GC2
SOFTWARE
PRO I:14 , ILE J:160 , ILE J:161 , TYR J:168
BINDING SITE FOR RESIDUE CL J 404
26
GC3
SOFTWARE
LYS I:10 , ASP J:180 , VAL J:183 , HOH J:514
BINDING SITE FOR RESIDUE PEG J 405
27
GC4
SOFTWARE
ASP J:270
BINDING SITE FOR RESIDUE PEG J 406
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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Label:
End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 20)
Info
All SCOP Domains
1a: SCOP_d4i0ua1 (A:3-285)
1b: SCOP_d4i0ub1 (B:2-285)
1c: SCOP_d4i0uc1 (C:3-285)
1d: SCOP_d4i0ud1 (D:7-285)
1e: SCOP_d4i0ue1 (E:5-285)
1f: SCOP_d4i0uf1 (F:4-285)
1g: SCOP_d4i0ug1 (G:4-285)
1h: SCOP_d4i0uh1 (H:6-285)
1i: SCOP_d4i0ui1 (I:5-285)
1j: SCOP_d4i0uj1 (J:5-285)
2a: SCOP_d4i0ua2 (A:286-349)
2b: SCOP_d4i0ub2 (B:286-349)
2c: SCOP_d4i0uc2 (C:286-349)
2d: SCOP_d4i0ud2 (D:286-349)
2e: SCOP_d4i0ue2 (E:286-349)
2f: SCOP_d4i0uf2 (F:286-349)
2g: SCOP_d4i0ug2 (G:286-349)
2h: SCOP_d4i0uh2 (H:286-348)
2i: SCOP_d4i0ui2 (I:286-349)
2j: SCOP_d4i0uj2 (J:286-349)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
CorA soluble domain-like
(5)
Superfamily
:
CorA soluble domain-like
(5)
Family
:
CorA soluble domain-like
(5)
Protein domain
:
automated matches
(2)
Thermotoga maritima [TaxId: 243274]
(1)
1a
d4i0ua1
A:3-285
1b
d4i0ub1
B:2-285
1c
d4i0uc1
C:3-285
1d
d4i0ud1
D:7-285
1e
d4i0ue1
E:5-285
1f
d4i0uf1
F:4-285
1g
d4i0ug1
G:4-285
1h
d4i0uh1
H:6-285
1i
d4i0ui1
I:5-285
1j
d4i0uj1
J:5-285
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Transmembrane helix hairpin
(84)
Superfamily
:
Magnesium transport protein CorA, transmembrane region
(4)
Family
:
Magnesium transport protein CorA, transmembrane region
(4)
Protein domain
:
Magnesium transport protein CorA
(4)
Thermotoga maritima [TaxId: 243274]
(1)
2a
d4i0ua2
A:286-349
2b
d4i0ub2
B:286-349
2c
d4i0uc2
C:286-349
2d
d4i0ud2
D:286-349
2e
d4i0ue2
E:286-349
2f
d4i0uf2
F:286-349
2g
d4i0ug2
G:286-349
2h
d4i0uh2
H:286-348
2i
d4i0ui2
I:286-349
2j
d4i0uj2
J:286-349
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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all PFAM domains
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Sorry, no Info available
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