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4I0U
Asym. Unit
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Asym.Unit (602 KB)
Biol.Unit 1 (301 KB)
Biol.Unit 2 (297 KB)
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(1)
Title
:
IMPROVED STRUCTURE OF THERMOTOGA MARITIMA CORA AT 2.7 A RESOLUTION
Authors
:
N. Nordin, A. Guskov, T. Phua, N. Sahaf, Y. Xia, S. Y. Lu, H. Eshaghi, S. Es
Date
:
19 Nov 12 (Deposition) - 06 Mar 13 (Release) - 10 Sep 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A,B,C,D,E (1x)
Biol. Unit 2: F,G,H,I,J (1x)
Keywords
:
Magnesium/Cobalt Transport, Metal Transport, Membrane Protein, Cora
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Nordin, A. Guskov, T. Phua, N. Sahaf, Y. Xia, S. Y. Lu, H. Eshaghi, S. Eshaghi
Exploring The Structure And Function Of Thermotoga Maritima Cora Reveals The Mechanism Of Gating And Ion Selectivity In Co2+/Mg2+ Transport.
Biochem. J. V. 451 365 2013
[
close entry info
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Hetero Components
(5, 62)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
1i: CHLORIDE ION (CLi)
1j: CHLORIDE ION (CLj)
1k: CHLORIDE ION (CLk)
1l: CHLORIDE ION (CLl)
1m: CHLORIDE ION (CLm)
2a: DODECYL-BETA-D-MALTOSIDE (LMTa)
2b: DODECYL-BETA-D-MALTOSIDE (LMTb)
2c: DODECYL-BETA-D-MALTOSIDE (LMTc)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
3f: MAGNESIUM ION (MGf)
3g: MAGNESIUM ION (MGg)
3h: MAGNESIUM ION (MGh)
3i: MAGNESIUM ION (MGi)
3j: MAGNESIUM ION (MGj)
3k: MAGNESIUM ION (MGk)
3l: MAGNESIUM ION (MGl)
3m: MAGNESIUM ION (MGm)
3n: MAGNESIUM ION (MGn)
3o: MAGNESIUM ION (MGo)
3p: MAGNESIUM ION (MGp)
3q: MAGNESIUM ION (MGq)
3r: MAGNESIUM ION (MGr)
3s: MAGNESIUM ION (MGs)
3t: MAGNESIUM ION (MGt)
3u: MAGNESIUM ION (MGu)
3v: MAGNESIUM ION (MGv)
3w: MAGNESIUM ION (MGw)
3x: MAGNESIUM ION (MGx)
4a: DI(HYDROXYETHYL)ETHER (PEGa)
4b: DI(HYDROXYETHYL)ETHER (PEGb)
4c: DI(HYDROXYETHYL)ETHER (PEGc)
4d: DI(HYDROXYETHYL)ETHER (PEGd)
4e: DI(HYDROXYETHYL)ETHER (PEGe)
4f: DI(HYDROXYETHYL)ETHER (PEGf)
4g: DI(HYDROXYETHYL)ETHER (PEGg)
4h: DI(HYDROXYETHYL)ETHER (PEGh)
4i: DI(HYDROXYETHYL)ETHER (PEGi)
4j: DI(HYDROXYETHYL)ETHER (PEGj)
4k: DI(HYDROXYETHYL)ETHER (PEGk)
4l: DI(HYDROXYETHYL)ETHER (PEGl)
4m: DI(HYDROXYETHYL)ETHER (PEGm)
4n: DI(HYDROXYETHYL)ETHER (PEGn)
4o: DI(HYDROXYETHYL)ETHER (PEGo)
4p: DI(HYDROXYETHYL)ETHER (PEGp)
4q: DI(HYDROXYETHYL)ETHER (PEGq)
4r: DI(HYDROXYETHYL)ETHER (PEGr)
4s: DI(HYDROXYETHYL)ETHER (PEGs)
4t: DI(HYDROXYETHYL)ETHER (PEGt)
4u: DI(HYDROXYETHYL)ETHER (PEGu)
5a: 2-(2-METHOXYETHOXY)ETHANOL (PG0a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
13
Ligand/Ion
CHLORIDE ION
2
LMT
3
Ligand/Ion
DODECYL-BETA-D-MALTOSIDE
3
MG
24
Ligand/Ion
MAGNESIUM ION
4
PEG
21
Ligand/Ion
DI(HYDROXYETHYL)ETHER
5
PG0
1
Ligand/Ion
2-(2-METHOXYETHOXY)ETHANOL
[
close Hetero Component info
]
Sites
(58, 58)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
58: GC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HOH A:506 , HOH A:507 , HOH D:501 , HOH D:502
BINDING SITE FOR RESIDUE MG A 401
02
AC2
SOFTWARE
ARG A:153 , ILE A:160 , ILE A:161 , TYR A:168 , PRO B:14
BINDING SITE FOR RESIDUE CL A 402
03
AC3
SOFTWARE
TYR A:311 , GLU A:320 , LEU B:331 , LMT B:406
BINDING SITE FOR RESIDUE LMT A 403
04
AC4
SOFTWARE
HOH A:501 , HOH A:502 , HOH A:503 , HOH B:501
BINDING SITE FOR RESIDUE MG B 401
05
AC5
SOFTWARE
ASP A:253 , HOH A:504 , HOH A:505 , ASP B:89 , HOH B:502 , HOH B:503
BINDING SITE FOR RESIDUE MG B 402
06
AC6
SOFTWARE
ASP B:253 , HOH B:506 , ASP C:89 , HOH C:503 , HOH C:504 , HOH C:505
BINDING SITE FOR RESIDUE MG B 403
07
AC7
SOFTWARE
GLY B:159 , ILE B:160 , ILE B:161 , TYR B:168 , HOH B:510 , PRO C:14
BINDING SITE FOR RESIDUE CL B 404
08
AC8
SOFTWARE
HOH A:502 , LYS B:9 , GLU B:88 , ASN B:92
BINDING SITE FOR RESIDUE CL B 405
09
AC9
SOFTWARE
LMT A:403
BINDING SITE FOR RESIDUE LMT B 406
10
BC1
SOFTWARE
TRP B:323
BINDING SITE FOR RESIDUE LMT B 407
11
BC2
SOFTWARE
GLN B:74 , GLU B:78 , HOH B:526
BINDING SITE FOR RESIDUE PEG B 408
12
BC3
SOFTWARE
GLN B:74 , GLU J:197
BINDING SITE FOR RESIDUE PEG B 409
13
BC4
SOFTWARE
GLU B:28 , LYS B:43
BINDING SITE FOR RESIDUE PEG B 410
14
BC5
SOFTWARE
ASP B:55
BINDING SITE FOR RESIDUE PEG B 411
15
BC6
SOFTWARE
HOH B:504 , HOH B:505 , HOH C:501 , HOH C:502
BINDING SITE FOR RESIDUE MG C 401
16
BC7
SOFTWARE
ASP C:179 , HOH C:506 , HOH C:507 , HOH C:508 , HOH E:501 , HOH E:502
BINDING SITE FOR RESIDUE MG C 402
17
BC8
SOFTWARE
LYS C:9 , GLU C:88 , ASN C:92 , HOH C:503
BINDING SITE FOR RESIDUE CL C 403
18
BC9
SOFTWARE
TYR C:168 , PRO E:14
BINDING SITE FOR RESIDUE CL C 404
19
CC1
SOFTWARE
PEG E:406
BINDING SITE FOR RESIDUE PEG C 405
20
CC2
SOFTWARE
ARG B:252 , VAL C:99 , GLU C:100 , PHE C:101 , SER C:234
BINDING SITE FOR RESIDUE PEG C 406
21
CC3
SOFTWARE
ASP A:89 , HOH A:508 , HOH A:509 , ASP D:253 , HIS D:257 , HOH D:503 , HOH D:504
BINDING SITE FOR RESIDUE MG D 402
22
CC4
SOFTWARE
LEU D:85 , ASP D:89 , HOH D:507 , HOH D:508 , ASP E:253 , HOH E:507
BINDING SITE FOR RESIDUE MG D 403
23
CC5
SOFTWARE
LYS D:9 , GLU D:88 , ASN D:92
BINDING SITE FOR RESIDUE CL D 404
24
CC6
SOFTWARE
ASP D:148
BINDING SITE FOR RESIDUE PEG D 405
25
CC7
SOFTWARE
ASP C:253 , HOH C:509 , ASP E:89 , HOH E:503 , HOH E:504 , HOH E:505
BINDING SITE FOR RESIDUE MG E 401
26
CC8
SOFTWARE
HOH D:505 , HOH D:506 , HOH E:506
BINDING SITE FOR RESIDUE MG E 402
27
CC9
SOFTWARE
PRO D:14 , ARG E:153 , ILE E:160 , TYR E:168
BINDING SITE FOR RESIDUE CL E 403
28
DC1
SOFTWARE
LYS E:9 , GLU E:88 , ASN E:92 , HOH E:503
BINDING SITE FOR RESIDUE CL E 404
29
DC2
SOFTWARE
GLU E:197 , GLU E:201 , ASP G:71 , HOH G:535
BINDING SITE FOR RESIDUE PEG E 405
30
DC3
SOFTWARE
PEG C:405 , PRO E:328 , PEG E:407
BINDING SITE FOR RESIDUE PEG E 406
31
DC4
SOFTWARE
PRO E:328 , PEG E:406
BINDING SITE FOR RESIDUE PEG E 407
32
DC5
SOFTWARE
LYS E:117 , GLU E:186 , ASP E:190
BINDING SITE FOR RESIDUE PEG E 408
33
DC6
SOFTWARE
GLU E:320
BINDING SITE FOR RESIDUE PG0 E 409
34
DC7
SOFTWARE
ASP F:179 , HOH F:501 , HOH G:501 , HOH G:502 , HOH G:503
BINDING SITE FOR RESIDUE MG F 401
35
DC8
SOFTWARE
GLU F:88 , ASP F:89 , HOH F:505 , HOH F:506 , HOH F:507 , ASP I:253
BINDING SITE FOR RESIDUE MG F 402
36
DC9
SOFTWARE
ILE F:160 , TYR F:168 , PRO G:14
BINDING SITE FOR RESIDUE CL F 403
37
EC1
SOFTWARE
ASP G:277
BINDING SITE FOR RESIDUE MG G 401
38
EC2
SOFTWARE
ASP F:253 , ASP G:89 , HOH G:504 , HOH G:505 , HOH G:506
BINDING SITE FOR RESIDUE MG G 403
39
EC3
SOFTWARE
HOH G:507 , HOH G:508 , HOH G:509 , HOH G:510 , HOH H:501
BINDING SITE FOR RESIDUE MG G 404
40
EC4
SOFTWARE
ASP G:253 , HOH G:511 , ASP H:89 , HOH H:502 , HOH H:503
BINDING SITE FOR RESIDUE MG G 405
41
EC5
SOFTWARE
ILE G:160 , ILE G:161 , TYR G:168 , HOH G:533 , PRO H:14
BINDING SITE FOR RESIDUE CL G 406
42
EC6
SOFTWARE
LYS G:9 , GLU G:88 , ASN G:92
BINDING SITE FOR RESIDUE CL G 407
43
EC7
SOFTWARE
PHE G:306 , LEU H:304 , LEU H:331
BINDING SITE FOR RESIDUE PEG G 408
44
EC8
SOFTWARE
GLN G:74 , HOH G:535
BINDING SITE FOR RESIDUE PEG G 409
45
EC9
SOFTWARE
GLU G:246
BINDING SITE FOR RESIDUE PEG G 411
46
FC1
SOFTWARE
GLU G:121 , GLN G:213
BINDING SITE FOR RESIDUE PEG G 412
47
FC2
SOFTWARE
ARG H:153 , ILE H:160 , TYR H:168 , PRO J:14
BINDING SITE FOR RESIDUE CL H 401
48
FC3
SOFTWARE
ASP H:256
BINDING SITE FOR RESIDUE PEG H 402
49
FC4
SOFTWARE
HOH F:502 , HOH F:503 , HOH F:504 , ASP I:175 , ASP I:179 , HOH I:501 , HOH I:502
BINDING SITE FOR RESIDUE MG I 401
50
FC5
SOFTWARE
HOH I:503 , HOH I:504 , HOH J:508 , HOH J:509 , HOH J:510 , HOH J:511
BINDING SITE FOR RESIDUE MG I 402
51
FC6
SOFTWARE
ASP I:89 , HOH I:505 , HOH I:506 , HOH I:507 , ASP J:253 , HOH J:512
BINDING SITE FOR RESIDUE MG I 403
52
FC7
SOFTWARE
GLN I:74
BINDING SITE FOR RESIDUE PEG I 404
53
FC8
SOFTWARE
GLY H:312 , GLY J:312 , ASN J:314
BINDING SITE FOR RESIDUE MG J 401
54
FC9
SOFTWARE
HOH H:504 , HOH H:505 , HOH J:501 , HOH J:502 , HOH J:503
BINDING SITE FOR RESIDUE MG J 402
55
GC1
SOFTWARE
ASP H:253 , ASP J:89 , HOH J:504 , HOH J:505 , HOH J:506 , HOH J:507
BINDING SITE FOR RESIDUE MG J 403
56
GC2
SOFTWARE
PRO I:14 , ILE J:160 , ILE J:161 , TYR J:168
BINDING SITE FOR RESIDUE CL J 404
57
GC3
SOFTWARE
LYS I:10 , ASP J:180 , VAL J:183 , HOH J:514
BINDING SITE FOR RESIDUE PEG J 405
58
GC4
SOFTWARE
ASP J:270
BINDING SITE FOR RESIDUE PEG J 406
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
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Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 20)
Info
All SCOP Domains
1a: SCOP_d4i0ua1 (A:3-285)
1b: SCOP_d4i0ub1 (B:2-285)
1c: SCOP_d4i0uc1 (C:3-285)
1d: SCOP_d4i0ud1 (D:7-285)
1e: SCOP_d4i0ue1 (E:5-285)
1f: SCOP_d4i0uf1 (F:4-285)
1g: SCOP_d4i0ug1 (G:4-285)
1h: SCOP_d4i0uh1 (H:6-285)
1i: SCOP_d4i0ui1 (I:5-285)
1j: SCOP_d4i0uj1 (J:5-285)
2a: SCOP_d4i0ua2 (A:286-349)
2b: SCOP_d4i0ub2 (B:286-349)
2c: SCOP_d4i0uc2 (C:286-349)
2d: SCOP_d4i0ud2 (D:286-349)
2e: SCOP_d4i0ue2 (E:286-349)
2f: SCOP_d4i0uf2 (F:286-349)
2g: SCOP_d4i0ug2 (G:286-349)
2h: SCOP_d4i0uh2 (H:286-348)
2i: SCOP_d4i0ui2 (I:286-349)
2j: SCOP_d4i0uj2 (J:286-349)
View:
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Classes
(
)
(
)
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(
)
(
)
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)
(
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(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
CorA soluble domain-like
(5)
Superfamily
:
CorA soluble domain-like
(5)
Family
:
CorA soluble domain-like
(5)
Protein domain
:
automated matches
(2)
Thermotoga maritima [TaxId: 243274]
(1)
1a
d4i0ua1
A:3-285
1b
d4i0ub1
B:2-285
1c
d4i0uc1
C:3-285
1d
d4i0ud1
D:7-285
1e
d4i0ue1
E:5-285
1f
d4i0uf1
F:4-285
1g
d4i0ug1
G:4-285
1h
d4i0uh1
H:6-285
1i
d4i0ui1
I:5-285
1j
d4i0uj1
J:5-285
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Transmembrane helix hairpin
(84)
Superfamily
:
Magnesium transport protein CorA, transmembrane region
(4)
Family
:
Magnesium transport protein CorA, transmembrane region
(4)
Protein domain
:
Magnesium transport protein CorA
(4)
Thermotoga maritima [TaxId: 243274]
(1)
2a
d4i0ua2
A:286-349
2b
d4i0ub2
B:286-349
2c
d4i0uc2
C:286-349
2d
d4i0ud2
D:286-349
2e
d4i0ue2
E:286-349
2f
d4i0uf2
F:286-349
2g
d4i0ug2
G:286-349
2h
d4i0uh2
H:286-348
2i
d4i0ui2
I:286-349
2j
d4i0uj2
J:286-349
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(0, 0)
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all PFAM domains
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Sorry, no Info available
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