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4HYJ
Biol. Unit 2
Info
Asym.Unit (167 KB)
Biol.Unit 1 (82 KB)
Biol.Unit 2 (80 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF EXIGUOBACTERIUM SIBIRICUM RHODOPSIN
Authors
:
I. Gushchin, P. Chervakov, P. Kuzmichev, A. Popov, E. Round, V. Borshch D. Dolgikh, M. Kirpichnikov, L. Petrovskaya, V. Chupin, A. Arseniev, V. Gordeliy
Date
:
13 Nov 12 (Deposition) - 17 Jul 13 (Release) - 11 Sep 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Seven-Helical Transmembrane Protein, Proton Pump, Membrane, Proton Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. Gushchin, P. Chervakov, P. Kuzmichev, A. N. Popov, E. Round, V. Borshchevskiy, A. Ishchenko, L. Petrovskaya, V. Chupin, D. A. Dolgikh, A. A. Arseniev, M. Kirpichnikov, V. Gordeliy
Structural Insights Into The Proton Pumping By Unusual Proteorhodopsin From Nonmarine Bacteria.
Proc. Natl. Acad. Sci. Usa V. 110 12631 2013
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Hetero Components
(2, 19)
Info
All Hetero Components
1a: EICOSANE (LFAa)
1aa: EICOSANE (LFAaa)
1ab: EICOSANE (LFAab)
1ac: EICOSANE (LFAac)
1ad: EICOSANE (LFAad)
1b: EICOSANE (LFAb)
1c: EICOSANE (LFAc)
1d: EICOSANE (LFAd)
1e: EICOSANE (LFAe)
1f: EICOSANE (LFAf)
1g: EICOSANE (LFAg)
1h: EICOSANE (LFAh)
1i: EICOSANE (LFAi)
1j: EICOSANE (LFAj)
1k: EICOSANE (LFAk)
1l: EICOSANE (LFAl)
1m: EICOSANE (LFAm)
1n: EICOSANE (LFAn)
1o: EICOSANE (LFAo)
1p: EICOSANE (LFAp)
1q: EICOSANE (LFAq)
1r: EICOSANE (LFAr)
1s: EICOSANE (LFAs)
1t: EICOSANE (LFAt)
1u: EICOSANE (LFAu)
1v: EICOSANE (LFAv)
1w: EICOSANE (LFAw)
1x: EICOSANE (LFAx)
1y: EICOSANE (LFAy)
1z: EICOSANE (LFAz)
2a: RETINAL (RETa)
2b: RETINAL (RETb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
LFA
18
Ligand/Ion
EICOSANE
2
RET
1
Ligand/Ion
RETINAL
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Sites
(22, 22)
Info
All Sites
01: AC3 (SOFTWARE)
02: AC4 (SOFTWARE)
03: AC9 (SOFTWARE)
04: BC3 (SOFTWARE)
05: BC4 (SOFTWARE)
06: BC5 (SOFTWARE)
07: BC6 (SOFTWARE)
08: BC7 (SOFTWARE)
09: BC8 (SOFTWARE)
10: BC9 (SOFTWARE)
11: CC1 (SOFTWARE)
12: CC2 (SOFTWARE)
13: CC3 (SOFTWARE)
14: CC4 (SOFTWARE)
15: CC5 (SOFTWARE)
16: CC6 (SOFTWARE)
17: CC7 (SOFTWARE)
18: CC8 (SOFTWARE)
19: CC9 (SOFTWARE)
20: DC1 (SOFTWARE)
21: DC2 (SOFTWARE)
22: DC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC3
SOFTWARE
PRO A:38 , THR A:45 , LEU A:49 , LFA A:305 , VAL B:53 , PHE B:60 , ILE B:81 , ILE B:84
BINDING SITE FOR RESIDUE LFA A 304
02
AC4
SOFTWARE
VAL A:88 , LFA A:304 , LEU B:49
BINDING SITE FOR RESIDUE LFA A 305
03
AC9
SOFTWARE
VAL A:124 , LFA B:317
BINDING SITE FOR RESIDUE LFA A 311
04
BC3
SOFTWARE
TYR B:83 , TRP B:86 , THR B:90 , MET B:122 , GLY B:126 , TYR B:147 , GLY B:150 , CYS B:151 , TRP B:191 , TYR B:194 , ASP B:221 , LYS B:225
BINDING SITE FOR RESIDUE RET B 301
05
BC4
SOFTWARE
LEU A:92 , VAL A:95 , GLU B:80 , ILE B:84
BINDING SITE FOR RESIDUE LFA B 302
06
BC5
SOFTWARE
THR B:45
BINDING SITE FOR RESIDUE LFA B 303
07
BC6
SOFTWARE
LYS B:62
BINDING SITE FOR RESIDUE LFA B 304
08
BC7
SOFTWARE
ILE A:158 , PHE A:162 , THR A:163 , LFA B:319
BINDING SITE FOR RESIDUE LFA B 305
09
BC8
SOFTWARE
LEU B:27
BINDING SITE FOR RESIDUE LFA B 306
10
BC9
SOFTWARE
PHE A:203 , LFA B:308 , LFA B:310
BINDING SITE FOR RESIDUE LFA B 307
11
CC1
SOFTWARE
PHE A:139 , PHE A:203 , LFA B:307
BINDING SITE FOR RESIDUE LFA B 308
12
CC2
SOFTWARE
GLU A:80 , TYR A:127 , VAL B:95 , LEU B:103 , ARG B:109
BINDING SITE FOR RESIDUE LFA B 309
13
CC3
SOFTWARE
LEU B:185 , LFA B:307
BINDING SITE FOR RESIDUE LFA B 310
14
CC4
SOFTWARE
THR B:223
BINDING SITE FOR RESIDUE LFA B 311
15
CC5
SOFTWARE
GLN B:141 , TRP B:145
BINDING SITE FOR RESIDUE LFA B 312
16
CC6
SOFTWARE
PHE A:152 , GLN B:141 , TRP B:145
BINDING SITE FOR RESIDUE LFA B 313
17
CC7
SOFTWARE
PHE B:52 , TYR B:59
BINDING SITE FOR RESIDUE LFA B 314
18
CC8
SOFTWARE
TYR B:156
BINDING SITE FOR RESIDUE LFA B 315
19
CC9
SOFTWARE
PHE A:234 , TYR B:13 , LFA B:318
BINDING SITE FOR RESIDUE LFA B 316
20
DC1
SOFTWARE
LFA A:311 , ILE B:121
BINDING SITE FOR RESIDUE LFA B 317
21
DC2
SOFTWARE
TYR A:28 , LEU A:230 , TRP B:16 , VAL B:20 , LFA B:316
BINDING SITE FOR RESIDUE LFA B 318
22
DC3
SOFTWARE
LFA B:305
BINDING SITE FOR RESIDUE LFA B 319
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d4hyja_ (A:)
1b: SCOP_d4hyjb_ (B:)
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Protein Domains
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)
Organisms
(
)
(
)
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Family A G protein-coupled receptor-like
(138)
Superfamily
:
Family A G protein-coupled receptor-like
(138)
Family
:
automated matches
(15)
Protein domain
:
automated matches
(15)
Exiguobacterium sibiricum [TaxId: 332410]
(1)
1a
d4hyja_
A:
1b
d4hyjb_
B:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Sorry, no Info available
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Protein
Nucleic
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All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain B
Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
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Show PDB file:
Asym.Unit (167 KB)
Header - Asym.Unit
Biol.Unit 1 (82 KB)
Header - Biol.Unit 1
Biol.Unit 2 (80 KB)
Header - Biol.Unit 2
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