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Asym. Unit
Info
Asym.Unit (180 KB)
Biol.Unit 1 (89 KB)
Biol.Unit 2 (88 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN SEPIAPTERIN REDUCTASE IN COMPLEX WITH SULFAPYRIDINE
Authors
:
M. Groenlund Pedersen, F. Pojer, K. Johnsson
Date
:
08 Nov 12 (Deposition) - 05 Jun 13 (Release) - 05 Jun 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Reductase, Oxidoreductase-Antibiotic Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Haruki, M. G. Pedersen, K. I. Gorska, F. Pojer, K. Johnsson
Tetrahydrobiopterin Biosynthesis As An Off-Target Of Sulfa Drugs.
Science V. 340 987 2013
[
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Hetero Components
(5, 26)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
2a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
2b: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPb)
2c: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPc)
2d: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPd)
3a: DI(HYDROXYETHYL)ETHER (PEGa)
3b: DI(HYDROXYETHYL)ETHER (PEGb)
4a: 4-AMINO-N-(PYRIDIN-2-YL)BENZENESUL... (SFYa)
4b: 4-AMINO-N-(PYRIDIN-2-YL)BENZENESUL... (SFYb)
4c: 4-AMINO-N-(PYRIDIN-2-YL)BENZENESUL... (SFYc)
4d: 4-AMINO-N-(PYRIDIN-2-YL)BENZENESUL... (SFYd)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
5f: SULFATE ION (SO4f)
5g: SULFATE ION (SO4g)
5h: SULFATE ION (SO4h)
5i: SULFATE ION (SO4i)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
7
Ligand/Ion
GLYCEROL
2
NAP
4
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
3
PEG
2
Ligand/Ion
DI(HYDROXYETHYL)ETHER
4
SFY
4
Ligand/Ion
4-AMINO-N-(PYRIDIN-2-YL)BENZENESULFONAMIDE
5
SO4
9
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(26, 26)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:11 , SER A:13 , ARG A:14 , GLY A:15 , PHE A:16 , ALA A:38 , ARG A:39 , ASN A:40 , ALA A:65 , ASP A:66 , LEU A:67 , ASN A:97 , ALA A:98 , LEU A:123 , ILE A:152 , SER A:153 , TYR A:167 , LYS A:171 , PRO A:195 , GLY A:196 , PRO A:197 , LEU A:198 , THR A:200 , MET A:202 , GLN A:203 , SFY A:807 , HOH A:901 , HOH A:902 , HOH A:903 , HOH A:914 , HOH A:921 , HOH A:926 , HOH A:937 , HOH A:956
BINDING SITE FOR RESIDUE NAP A 801
02
AC2
SOFTWARE
ARG A:39 , HOH A:921 , HOH A:991
BINDING SITE FOR RESIDUE SO4 A 802
03
AC3
SOFTWARE
LYS A:87 , GLY A:88
BINDING SITE FOR RESIDUE GOL A 803
04
AC4
SOFTWARE
GLY A:196 , ASP A:254 , SFY A:807 , SO4 A:808 , HOH A:905 , HOH A:1004
BINDING SITE FOR RESIDUE GOL A 804
05
AC5
SOFTWARE
ARG A:45 , ARG A:62
BINDING SITE FOR RESIDUE SO4 A 805
06
AC6
SOFTWARE
ASP A:199 , GLY A:226 , LEU A:228 , ASP C:230 , HOH C:967
BINDING SITE FOR RESIDUE GOL A 806
07
AC7
SOFTWARE
SER A:154 , LEU A:155 , CYS A:156 , PHE A:161 , TRP A:164 , TYR A:167 , GLY A:196 , PRO A:197 , GLN A:203 , NAP A:801 , GOL A:804 , PEG A:810 , HOH A:905
BINDING SITE FOR RESIDUE SFY A 807
08
AC8
SOFTWARE
TYR A:256 , GOL A:804
BINDING SITE FOR RESIDUE SO4 A 808
09
AC9
SOFTWARE
GLY A:15 , ASP A:201 , HOH A:901 , LYS B:87
BINDING SITE FOR RESIDUE GOL A 809
10
BC1
SOFTWARE
SFY A:807 , HOH A:1004
BINDING SITE FOR RESIDUE PEG A 810
11
BC2
SOFTWARE
GLY B:11 , SER B:13 , ARG B:14 , GLY B:15 , PHE B:16 , ALA B:38 , ARG B:39 , ASN B:40 , ALA B:65 , ASP B:66 , LEU B:67 , ASN B:97 , ALA B:98 , LEU B:123 , ILE B:152 , SER B:153 , TYR B:167 , LYS B:171 , PRO B:195 , GLY B:196 , PRO B:197 , LEU B:198 , THR B:200 , MET B:202 , GLN B:203 , SFY B:806 , HOH B:903 , HOH B:908 , HOH B:912 , HOH B:914 , HOH B:926 , HOH B:931 , HOH B:947 , HOH B:969
BINDING SITE FOR RESIDUE NAP B 801
12
BC3
SOFTWARE
ARG B:39 , HOH B:931 , HOH B:932
BINDING SITE FOR RESIDUE SO4 B 802
13
BC4
SOFTWARE
ASP B:254 , SFY B:806
BINDING SITE FOR RESIDUE GOL B 803
14
BC5
SOFTWARE
ARG A:45 , ARG B:59 , VAL B:60 , HOH B:974
BINDING SITE FOR RESIDUE SO4 B 804
15
BC6
SOFTWARE
LYS B:87 , GLY B:88
BINDING SITE FOR RESIDUE SO4 B 805
16
BC7
SOFTWARE
SER B:154 , LEU B:155 , CYS B:156 , PHE B:161 , TRP B:164 , TYR B:167 , GLY B:196 , PRO B:197 , GLN B:203 , NAP B:801 , GOL B:803 , GOL B:807 , HOH B:905
BINDING SITE FOR RESIDUE SFY B 806
17
BC8
SOFTWARE
MET B:215 , GLY B:218 , SFY B:806
BINDING SITE FOR RESIDUE GOL B 807
18
BC9
SOFTWARE
GLY C:11 , SER C:13 , ARG C:14 , GLY C:15 , PHE C:16 , ALA C:38 , ARG C:39 , ASN C:40 , ALA C:65 , ASP C:66 , LEU C:67 , ASN C:97 , ALA C:98 , LEU C:123 , ILE C:152 , SER C:153 , TYR C:167 , LYS C:171 , PRO C:195 , GLY C:196 , PRO C:197 , LEU C:198 , THR C:200 , MET C:202 , GLN C:203 , SFY C:804 , HOH C:901 , HOH C:917 , HOH C:931 , HOH C:939 , HOH C:940 , HOH C:955 , HOH C:956
BINDING SITE FOR RESIDUE NAP C 801
19
CC1
SOFTWARE
ARG C:39 , HOH C:955
BINDING SITE FOR RESIDUE SO4 C 802
20
CC2
SOFTWARE
GLY C:196 , ASP C:254 , SFY C:804 , HOH C:902
BINDING SITE FOR RESIDUE GOL C 803
21
CC3
SOFTWARE
SER C:154 , LEU C:155 , CYS C:156 , PHE C:161 , TRP C:164 , TYR C:167 , GLY C:196 , PRO C:197 , GLN C:203 , MET C:215 , NAP C:801 , GOL C:803 , PEG C:805 , HOH C:902
BINDING SITE FOR RESIDUE SFY C 804
22
CC4
SOFTWARE
ASP C:214 , MET C:215 , SFY C:804 , HOH C:973
BINDING SITE FOR RESIDUE PEG C 805
23
CC5
SOFTWARE
GLY D:11 , SER D:13 , ARG D:14 , GLY D:15 , PHE D:16 , ALA D:38 , ARG D:39 , ASN D:40 , ALA D:65 , ASP D:66 , LEU D:67 , ASN D:97 , ALA D:98 , LEU D:123 , ILE D:152 , SER D:153 , TYR D:167 , LYS D:171 , PRO D:195 , GLY D:196 , PRO D:197 , LEU D:198 , THR D:200 , MET D:202 , GLN D:203 , SFY D:803 , HOH D:904 , HOH D:933 , HOH D:937 , HOH D:938 , HOH D:941 , HOH D:948
BINDING SITE FOR RESIDUE NAP D 801
24
CC6
SOFTWARE
ARG D:39 , HOH D:938
BINDING SITE FOR RESIDUE SO4 D 802
25
CC7
SOFTWARE
SER D:154 , LEU D:155 , CYS D:156 , PHE D:161 , TRP D:164 , TYR D:167 , GLY D:196 , PRO D:197 , GLN D:203 , NAP D:801 , HOH D:912
BINDING SITE FOR RESIDUE SFY D 803
26
CC8
SOFTWARE
ARG B:55 , ARG D:45 , ARG D:62
BINDING SITE FOR RESIDUE SO4 D 804
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
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View:
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4hwka_ (A:)
1b: SCOP_d4hwkb_ (B:)
1c: SCOP_d4hwkc_ (C:)
1d: SCOP_d4hwkd_ (D:)
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(
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Tyrosine-dependent oxidoreductases
(503)
Protein domain
:
Sepiapterin reductase
(7)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d4hwka_
A:
1b
d4hwkb_
B:
1c
d4hwkc_
C:
1d
d4hwkd_
D:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
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Sorry, no Info available
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