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Asym. Unit
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Asym.Unit (189 KB)
Biol.Unit 1 (181 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ECTODOMAIN 3 OF THE IL-13 RECEPTOR ALPHA 1 IN COMPLEX WITH A HUMAN NEUTRALIZING MONOCLONAL ANTIBODY FRAGMENT
Authors
:
Y. Xu
Date
:
07 Nov 12 (Deposition) - 27 Feb 13 (Release) - 24 Jul 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.61
Chains
:
Asym. Unit : A,H,L
Biol. Unit 1: A,H,L (1x)
Keywords
:
Fab, Fniii, Cytokine Signaling, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. T. Redpath, Y. Xu, N. J. Wilson, L. J. Fabri, M. Baca, A. E. Andrews, H. Braley, P. Lu, C. Ireland, R. E. Ernst, A. Woods, G. Forrest, Z. An, D. M. Zaller, W. R. Strohl, C. S. Luo, P. E. Czabotar, T. P. Garrett, D. J. Hilton, A. D. Nash, J. G. Zhang, N. A. Nicola
Crystal Structure Of Ectodomain 3 Of The Il-13 Receptor Alpha 1 In Complex With A Human Neutralizing Monoclonal Antibody Fragment
Biochem. J. V. 451 165 2013
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Hetero Components
(2, 18)
Info
All Hetero Components
1a: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFON... (NHEa)
1b: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFON... (NHEb)
1c: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFON... (NHEc)
1d: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFON... (NHEd)
1e: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFON... (NHEe)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
2m: SULFATE ION (SO4m)
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No.
Name
Count
Type
Full Name
1
NHE
5
Ligand/Ion
2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID
2
SO4
13
Ligand/Ion
SULFATE ION
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:289 , HOH A:503 , HOH A:506 , SER L:30
BINDING SITE FOR RESIDUE SO4 A 401
02
AC2
SOFTWARE
ARG A:285 , TRP A:304
BINDING SITE FOR RESIDUE SO4 A 402
03
AC3
SOFTWARE
PHE A:227 , ARG A:230 , ILE A:286 , TRP A:301 , SER A:302 , ASN A:303 , NHE A:404 , TYR H:58
BINDING SITE FOR RESIDUE NHE A 403
04
AC4
SOFTWARE
ASP A:203 , PRO A:205 , ASN A:223 , PRO A:224 , ASN A:226 , PHE A:227 , TYR A:234 , ILE A:286 , NHE A:403 , ASP H:56
BINDING SITE FOR RESIDUE NHE A 404
05
AC5
SOFTWARE
LEU A:232 , PHE A:233 , TYR A:234 , GLN A:252 , GLU A:253 , ALA A:254 , LYS A:255
BINDING SITE FOR RESIDUE NHE A 405
06
AC6
SOFTWARE
LYS H:20 , GLN H:83
BINDING SITE FOR RESIDUE SO4 H 301
07
AC7
SOFTWARE
SER H:8 , GLY H:9 , LYS H:14 , SER H:121 , THR H:122
BINDING SITE FOR RESIDUE SO4 H 302
08
AC8
SOFTWARE
GLU H:17 , SER H:18
BINDING SITE FOR RESIDUE SO4 H 303
09
AC9
SOFTWARE
ASN H:205 , LYS H:207 , LYS H:212 , HOH H:429
BINDING SITE FOR RESIDUE SO4 H 304
10
BC1
SOFTWARE
VAL H:3 , TYR H:33 , ARG H:99
BINDING SITE FOR RESIDUE SO4 H 305
11
BC2
SOFTWARE
LEU A:293 , TYR A:295 , GLU A:296 , ASP A:297 , ARG H:60 , TYR H:61 , GLU L:93
BINDING SITE FOR RESIDUE NHE H 306
12
BC3
SOFTWARE
GLU A:296 , TYR H:58 , THR H:59 , ARG H:60 , TYR H:61 , GLN H:66
BINDING SITE FOR RESIDUE NHE H 307
13
BC4
SOFTWARE
LYS L:40 , GLN L:43 , ARG L:46 , SO4 L:304
BINDING SITE FOR RESIDUE SO4 L 301
14
BC5
SOFTWARE
ARG L:208
BINDING SITE FOR RESIDUE SO4 L 302
15
BC6
SOFTWARE
PRO L:8 , GLY L:9 , THR L:10 , HOH L:414
BINDING SITE FOR RESIDUE SO4 L 303
16
BC7
SOFTWARE
ARG L:46 , ARG L:62 , SO4 L:301
BINDING SITE FOR RESIDUE SO4 L 304
17
BC8
SOFTWARE
ARG L:55 , SER L:64
BINDING SITE FOR RESIDUE SO4 L 305
18
BC9
SOFTWARE
PRO L:60 , ASP L:61 , ARG L:62
BINDING SITE FOR RESIDUE SO4 L 306
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d4hwbl1 (L:1-104)
1b: SCOP_d4hwbl2 (L:105-212)
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Class
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All beta proteins
(24004)
Fold
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Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
automated matches
(864)
Protein domain
:
automated matches
(864)
Human (Homo sapiens) [TaxId: 9606]
(448)
1a
d4hwbl1
L:1-104
1b
d4hwbl2
L:105-212
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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