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4HUU
Biol. Unit 1
Info
Asym.Unit (153 KB)
Biol.Unit 1 (149 KB)
Biol.Unit 2 (148 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF H2DB-NPM6I
Authors
:
S. Gras, K. A. Twist, J. Rossjohn
Date
:
04 Nov 12 (Deposition) - 27 Feb 13 (Release) - 24 Apr 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (2x)
Biol. Unit 2: D,E,F (2x)
Keywords
:
Viral Immunity, T Cell, H2Db, Influenza, Viral Escape, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. A. Valkenburg, S. Gras, C. Guillonneau, L. A. Hatton, N. A. Bird, K. A. Twist, H. Halim, D. C. Jackson, A. W. Purcell, S. J. Turner, P. C. Doherty, J. Rossjohn, K. Kedzierska
Preemptive Priming Readily Overcomes Structure-Based Mechanisms Of Virus Escape.
Proc. Natl. Acad. Sci. Usa V. 110 5570 2013
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
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No.
Name
Count
Type
Full Name
1
ACT
4
Ligand/Ion
ACETATE ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR B:75 , THR B:77 , HOH B:220 , HOH B:257 , HIS D:191 , HIS D:192 , HOH D:414 , ASP E:98
BINDING SITE FOR RESIDUE ACT B 101
2
AC2
SOFTWARE
PRO B:90 , LYS B:91 , THR B:92 , HOH B:289 , HOH B:296 , SER D:195 , LYS D:196
BINDING SITE FOR RESIDUE ACT B 102
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d4huub_ (B:)
1b: SCOP_d4huue_ (E:)
2a: SCOP_d4huua2 (A:182-278)
2b: SCOP_d4huud2 (D:182-277)
3a: SCOP_d4huua1 (A:1-181)
3b: SCOP_d4huud1 (D:2-181)
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Protein Domains
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Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
beta2-microglobulin
(530)
Mouse (Mus musculus) [TaxId: 10090]
(166)
1a
d4huub_
B:
1b
d4huue_
E:
Protein domain
:
Class I MHC, alpha-3 domain
(293)
Mouse (Mus musculus) [TaxId: 10090]
(102)
2a
d4huua2
A:182-278
2b
d4huud2
D:182-277
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
MHC antigen-recognition domain
(585)
Superfamily
:
MHC antigen-recognition domain
(585)
Family
:
MHC antigen-recognition domain
(533)
Protein domain
:
Class I MHC, alpha-1 and alpha-2 domains
(294)
Mouse (Mus musculus), H-2DB [TaxId: 10090]
(25)
3a
d4huua1
A:1-181
3b
d4huud1
D:2-181
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CATH Domains
(0, 0)
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Pfam Domains
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Asym.Unit (153 KB)
Header - Asym.Unit
Biol.Unit 1 (149 KB)
Header - Biol.Unit 1
Biol.Unit 2 (148 KB)
Header - Biol.Unit 2
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