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4HUR
Asym. Unit
Info
Asym.Unit (242 KB)
Biol.Unit 1 (234 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF STREPTOGRAMIN GROUP A ANTIBIOTIC ACETYLTRANSFERASE VATA FROM STAPHYLOCOCCUS AUREUS IN COMPLEX WITH ACETYL COENZYME A
Authors
:
P. J. Stogios, G. Minasov, E. Evdokimova, Z. Wawrzak, V. Yim, M. Krishna R. Di Leo, P. Courvalin, A. Savchenko, W. F. Anderson, Center For St Genomics Of Infectious Diseases (Csgid)
Date
:
03 Nov 12 (Deposition) - 14 Nov 12 (Release) - 24 Dec 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Structural Genomics, Antibiotic Resistance, Center For Structural Genomics Of Infectious Diseases (Csgid), Niaid, National Institute Of Allergy And Infectious Diseases, Xenobiotic Acyltransferase (Xat) Family, Hexapeptide Repeat Acyltransferase, Streptogramin Group A Antibiotic Acetyltransferase, Streptogramin Group A Antibiotics, Streptogramin A, Virginiamycin M1, Dalfopristin, Acetyl Coenzyme A, Coenzyme A, Intracellular, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. J. Stogios, M. L. Kuhn, E. Evdokimova, P. Courvalin, W. F. Anderson, A. Savchenko
Potential For Reduction Of Streptogramin A Resistance Revealed By Structural Analysis Of Acetyltransferase Vata.
Antimicrob. Agents Chemother. V. 58 7083 2014
[
close entry info
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Hetero Components
(5, 36)
Info
All Hetero Components
1a: ACETYL COENZYME *A (ACOa)
1b: ACETYL COENZYME *A (ACOb)
1c: ACETYL COENZYME *A (ACOc)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
3h: 1,2-ETHANEDIOL (EDOh)
3i: 1,2-ETHANEDIOL (EDOi)
3j: 1,2-ETHANEDIOL (EDOj)
3k: 1,2-ETHANEDIOL (EDOk)
3l: 1,2-ETHANEDIOL (EDOl)
3m: 1,2-ETHANEDIOL (EDOm)
3n: 1,2-ETHANEDIOL (EDOn)
3o: 1,2-ETHANEDIOL (EDOo)
3p: 1,2-ETHANEDIOL (EDOp)
3q: 1,2-ETHANEDIOL (EDOq)
3r: 1,2-ETHANEDIOL (EDOr)
3s: 1,2-ETHANEDIOL (EDOs)
3t: 1,2-ETHANEDIOL (EDOt)
3u: 1,2-ETHANEDIOL (EDOu)
3v: 1,2-ETHANEDIOL (EDOv)
3w: 1,2-ETHANEDIOL (EDOw)
3x: 1,2-ETHANEDIOL (EDOx)
3y: 1,2-ETHANEDIOL (EDOy)
3z: 1,2-ETHANEDIOL (EDOz)
4a: SODIUM ION (NAa)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACO
3
Ligand/Ion
ACETYL COENZYME *A
2
CL
2
Ligand/Ion
CHLORIDE ION
3
EDO
26
Ligand/Ion
1,2-ETHANEDIOL
4
NA
1
Ligand/Ion
SODIUM ION
5
SO4
4
Ligand/Ion
SULFATE ION
[
close Hetero Component info
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Sites
(36, 36)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:42 , SER A:73 , ILE A:74 , GLY A:75 , TRP A:126 , GLY A:128 , ARG A:129 , ALA A:146 , ALA A:147 , GLY A:162 , GLY A:163 , ILE A:169 , ARG A:170 , HOH A:402 , HOH A:472 , HOH A:550 , HOH A:575 , TYR B:57 , ALA B:85 , ASN B:86 , HIS B:87 , LYS B:116 , THR B:152 , PRO B:165 , HOH B:405 , HOH B:463
BINDING SITE FOR RESIDUE ACO A 301
02
AC2
SOFTWARE
LYS A:27 , GLY A:38 , GLU A:39 , ARG A:70 , HOH A:432 , HOH A:446
BINDING SITE FOR RESIDUE SO4 A 302
03
AC3
SOFTWARE
LYS A:153 , LYS A:167 , PHE A:168
BINDING SITE FOR RESIDUE SO4 A 303
04
AC4
SOFTWARE
ARG A:88 , ASP A:112 , ASN C:203
BINDING SITE FOR RESIDUE SO4 A 304
05
AC5
SOFTWARE
TYR A:59 , GLU A:60 , HOH A:454
BINDING SITE FOR RESIDUE EDO A 305
06
AC6
SOFTWARE
LYS A:153 , ASN A:154
BINDING SITE FOR RESIDUE EDO A 306
07
AC7
SOFTWARE
ASN A:123 , TRP A:187 , ASN A:188 , HOH A:537
BINDING SITE FOR RESIDUE EDO A 307
08
AC8
SOFTWARE
GLU A:39 , TYR A:40 , ARG A:70 , TRP A:187 , LEU A:189 , MET A:191
BINDING SITE FOR RESIDUE EDO A 308
09
AC9
SOFTWARE
ILE A:193 , ASN A:197 , LYS A:212 , LEU A:216
BINDING SITE FOR RESIDUE EDO A 309
10
BC1
SOFTWARE
GLY A:140 , ASN A:154 , VAL A:155 , ALA A:156 , PRO A:157 , HOH A:500
BINDING SITE FOR RESIDUE EDO A 310
11
BC2
SOFTWARE
ARG A:211 , HOH A:508 , HOH A:566 , LYS B:27 , HOH B:420
BINDING SITE FOR RESIDUE EDO A 311
12
BC3
SOFTWARE
GLU A:120 , GLY A:122 , ILE A:139 , HOH A:420 , HOH A:500
BINDING SITE FOR RESIDUE EDO A 312
13
BC4
SOFTWARE
ARG A:129 , HOH A:585 , ASP B:53 , GLN B:54
BINDING SITE FOR RESIDUE EDO A 313
14
BC5
SOFTWARE
GLY A:117 , ASP A:118 , LYS A:138
BINDING SITE FOR RESIDUE EDO A 314
15
BC6
SOFTWARE
LYS A:138
BINDING SITE FOR RESIDUE EDO A 315
16
BC7
SOFTWARE
ASN A:164 , HOH A:426 , ASN B:164 , HOH B:502 , ASN C:164 , HOH C:422
BINDING SITE FOR RESIDUE NA A 316
17
BC8
SOFTWARE
TYR B:42 , SER B:73 , ILE B:74 , GLY B:75 , TRP B:126 , ILE B:127 , GLY B:128 , ARG B:129 , ALA B:146 , ALA B:147 , GLY B:162 , GLY B:163 , ILE B:169 , ARG B:170 , HOH B:408 , HOH B:466 , HOH B:496 , HOH B:511 , TYR C:57 , ALA C:85 , ASN C:86 , HIS C:87 , LYS C:116 , MET C:134 , THR C:152 , PRO C:165 , HOH C:429 , HOH C:466
BINDING SITE FOR RESIDUE ACO B 301
18
BC9
SOFTWARE
HOH A:583 , GLU B:39 , ARG B:70 , TRP B:187 , LEU B:189 , MET B:191 , ILE B:194 , HOH B:564
BINDING SITE FOR RESIDUE EDO B 302
19
CC1
SOFTWARE
MET A:208 , LEU B:36 , GLY B:38 , ILE B:67 , ILE B:68 , GLY B:69 , HOH B:409 , HOH B:462
BINDING SITE FOR RESIDUE EDO B 303
20
CC2
SOFTWARE
ASN A:203 , ARG B:88 , LEU B:189 , ASP B:190 , ILE B:193 , HOH B:460
BINDING SITE FOR RESIDUE EDO B 304
21
CC3
SOFTWARE
PRO B:9 , ASP B:10 , HOH B:562
BINDING SITE FOR RESIDUE EDO B 305
22
CC4
SOFTWARE
LYS B:153 , LYS B:167 , PHE B:168
BINDING SITE FOR RESIDUE EDO B 306
23
CC5
SOFTWARE
VAL B:155
BINDING SITE FOR RESIDUE EDO B 307
24
CC6
SOFTWARE
GLY B:117 , ASP B:118 , LYS B:138 , HOH B:597
BINDING SITE FOR RESIDUE CL B 308
25
CC7
SOFTWARE
HOH A:593 , TYR B:57 , HOH B:520
BINDING SITE FOR RESIDUE CL B 309
26
CC8
SOFTWARE
TYR A:57 , ALA A:85 , ASN A:86 , LYS A:116 , MET A:134 , THR A:152 , PRO A:165 , HOH A:538 , TYR C:42 , SER C:73 , ILE C:74 , GLY C:75 , TRP C:126 , ILE C:127 , GLY C:128 , ARG C:129 , ALA C:146 , ALA C:147 , GLY C:162 , GLY C:163 , ILE C:169 , ARG C:170 , HOH C:401 , HOH C:443 , HOH C:460 , HOH C:561
BINDING SITE FOR RESIDUE ACO C 301
27
CC9
SOFTWARE
LYS C:27 , GLY C:38 , GLU C:39 , ARG C:70 , HOH C:456 , HOH C:533 , HOH C:548
BINDING SITE FOR RESIDUE SO4 C 302
28
DC1
SOFTWARE
LYS C:167 , PHE C:168
BINDING SITE FOR RESIDUE EDO C 303
29
DC2
SOFTWARE
ILE C:30 , THR C:31 , ASN C:32 , HOH C:600
BINDING SITE FOR RESIDUE EDO C 304
30
DC3
SOFTWARE
GLU C:120 , GLY C:122 , ILE C:139 , GLY C:140
BINDING SITE FOR RESIDUE EDO C 305
31
DC4
SOFTWARE
SER C:109 , LEU C:110 , LYS C:111 , HOH C:612
BINDING SITE FOR RESIDUE EDO C 306
32
DC5
SOFTWARE
GLU C:33 , ASN C:34 , LEU C:36 , VAL C:61 , LYS C:65
BINDING SITE FOR RESIDUE EDO C 307
33
DC6
SOFTWARE
ASN C:123 , GLN C:185 , TRP C:187 , ASN C:188
BINDING SITE FOR RESIDUE EDO C 308
34
DC7
SOFTWARE
ASN B:203 , ARG C:88 , HOH C:557
BINDING SITE FOR RESIDUE EDO C 309
35
DC8
SOFTWARE
HOH B:511 , PRO C:95 , HIS C:97 , HOH C:442
BINDING SITE FOR RESIDUE EDO C 310
36
DC9
SOFTWARE
ARG B:129 , ASP C:53 , GLN C:54 , THR C:79 , HOH C:415
BINDING SITE FOR RESIDUE EDO C 311
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
View:
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Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d4hura_ (A:)
1b: SCOP_d4hurb_ (B:)
1c: SCOP_d4hurc_ (C:)
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Classes
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Single-stranded left-handed beta-helix
(154)
Superfamily
:
Trimeric LpxA-like enzymes
(147)
Family
:
Galactoside acetyltransferase-like
(21)
Protein domain
:
automated matches
(6)
Staphylococcus aureus [TaxId: 1280]
(3)
1a
d4hura_
A:
1b
d4hurb_
B:
1c
d4hurc_
C:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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Atom Selection
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Asymmetric Unit 1
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