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Asym. Unit
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Asym.Unit (290 KB)
Biol.Unit 1 (280 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A PYRROLIDONE-CARBOXYLATE PEPTIDASE 1 (TARGET ID NYSGRC-012831) FROM XENORHABDUS BOVIENII SS-2004 IN SPACE GROUP P21
Authors
:
A. Ghosh, S. C. Almo, New York Structural Genomics Research Conso (Nysgrc)
Date
:
24 Oct 12 (Deposition) - 14 Nov 12 (Release) - 14 Nov 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.55
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Structural Genomics, Nysgrc, Psi-Biology, New York Structural Genomics Research Consortium, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Ghosh, A. Ahmed, R. Banu, R. Bhoshle, J. Bonanno, S. Chamala, S. Chowdhury, A Fiser, A. S. Glenn, B. Hillerich, K. Khafizov, J. Lafleur, J. D. Love, R. Seidel, M. Stead, R. Toro, S. C. Almo
Crystal Structure Of A Pyrrolidone-Carboxylate Peptidase 1 (Target Id Nysgrc-012831) From Xenorhabdus Bovienii Ss-2004 In Space Group P21
To Be Published
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Hetero Components
(1, 15)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
1i: CHLORIDE ION (CLi)
1j: CHLORIDE ION (CLj)
1k: CHLORIDE ION (CLk)
1l: CHLORIDE ION (CLl)
1m: CHLORIDE ION (CLm)
1n: CHLORIDE ION (CLn)
1o: CHLORIDE ION (CLo)
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No.
Name
Count
Type
Full Name
1
CL
15
Ligand/Ion
CHLORIDE ION
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN A:41 , HIS A:52
BINDING SITE FOR RESIDUE CL A 301
02
AC2
SOFTWARE
LEU A:186
BINDING SITE FOR RESIDUE CL A 302
03
AC3
SOFTWARE
ASP B:88 , ALA B:89 , ARG B:90 , PHE B:141
BINDING SITE FOR RESIDUE CL B 301
04
AC4
SOFTWARE
GLN B:70 , GLY B:72 , HOH B:477 , HOH B:509
BINDING SITE FOR RESIDUE CL B 302
05
AC5
SOFTWARE
MET B:187 , HOH B:419 , HOH D:413 , HOH D:630
BINDING SITE FOR RESIDUE CL B 303
06
AC6
SOFTWARE
THR B:185 , LEU B:186
BINDING SITE FOR RESIDUE CL B 304
07
AC7
SOFTWARE
GLN B:136 , HOH B:420
BINDING SITE FOR RESIDUE CL B 305
08
AC8
SOFTWARE
HOH B:501 , GLY C:139 , THR C:140 , CL C:303
BINDING SITE FOR RESIDUE CL C 301
09
AC9
SOFTWARE
LEU C:186
BINDING SITE FOR RESIDUE CL C 302
10
BC1
SOFTWARE
ASP C:88 , ARG C:90 , CL C:301
BINDING SITE FOR RESIDUE CL C 303
11
BC2
SOFTWARE
HOH A:553 , LYS D:119
BINDING SITE FOR RESIDUE CL D 301
12
BC3
SOFTWARE
HOH A:478 , GLY D:139 , THR D:140 , CL D:303
BINDING SITE FOR RESIDUE CL D 302
13
BC4
SOFTWARE
ASP D:88 , ALA D:89 , ARG D:90 , CL D:302
BINDING SITE FOR RESIDUE CL D 303
14
BC5
SOFTWARE
GLY D:73 , SER D:182
BINDING SITE FOR RESIDUE CL D 304
15
BC6
SOFTWARE
LEU D:186 , HOH D:550
BINDING SITE FOR RESIDUE CL D 305
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4hpsa_ (A:)
1b: SCOP_d4hpsb_ (B:)
1c: SCOP_d4hpsc_ (C:)
1d: SCOP_d4hpsd_ (D:)
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Protein Domains
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Organisms
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(
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Phosphorylase/hydrolase-like
(558)
Superfamily
:
Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
(19)
Family
:
automated matches
(5)
Protein domain
:
automated matches
(5)
Xenorhabdus bovienii [TaxId: 406818]
(2)
1a
d4hpsa_
A:
1b
d4hpsb_
B:
1c
d4hpsc_
C:
1d
d4hpsd_
D:
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CATH Domains
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all CATH domains
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Pfam Domains
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Asymmetric Unit 1
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