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4HMZ
Asym. Unit
Info
Asym.Unit (146 KB)
Biol.Unit 1 (71 KB)
Biol.Unit 2 (72 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CHMJ, A 3'-MONOEPIMERASE FROM STREPTOMYCES BIKINIENSIS IN COMPLEX WITH DTDP-QUINOVOSE
Authors
:
H. M. Holden, R. L. Kubiak
Date
:
18 Oct 12 (Deposition) - 21 Nov 12 (Release) - 05 Dec 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
3'-Monoepimerase, Natural Product, Deoxysugar, Chalcomycin, Dtdp- Mycinose, Dtdp-Quinovose, Cupin Fold, Nucleotide-Linked Sugar, Epimerization, Unknown Function
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
R. L. Kubiak, R. K. Phillips, M. W. Zmudka, M. R. Ahn, E. M. Maka, G. L. Pyeatt, S. J. Roggensack, H. M. Holden
Structural And Functional Studies On A 3'-Epimerase Involve In The Biosynthesis Of Dtdp-6-Deoxy-D-Allose.
Biochemistry V. 51 9375 2012
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Hetero Components
(2, 11)
Info
All Hetero Components
1a: [(2R,3S,5R)-3-HYDROXY-5-(5-METHYL-... (18Ta)
1b: [(2R,3S,5R)-3-HYDROXY-5-(5-METHYL-... (18Tb)
1c: [(2R,3S,5R)-3-HYDROXY-5-(5-METHYL-... (18Tc)
1d: [(2R,3S,5R)-3-HYDROXY-5-(5-METHYL-... (18Td)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
View:
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Label:
No.
Name
Count
Type
Full Name
1
18T
4
Ligand/Ion
[(2R,3S,5R)-3-HYDROXY-5-(5-METHYL-2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL)TETRAHYDROFURAN-2-YL]METHYL(2R,3R,4S,5S,6R)-3,4,5-TRIHYDROXY-6-METHYLTETRAHYDRO-2H-PYRAN-2-YL DIHYDROGEN DIPHOSPHATE
2
EDO
7
Ligand/Ion
1,2-ETHANEDIOL
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PHE A:28 , ARG A:29 , SER A:32 , TYR A:71 , HOH A:401
BINDING SITE FOR RESIDUE EDO A 301
02
AC2
SOFTWARE
THR A:62 , GLN A:68 , TYR A:136 , ALA A:137 , PRO A:138 , GLU A:141 , HOH A:468
BINDING SITE FOR RESIDUE EDO A 302
03
AC3
SOFTWARE
GLN A:45 , ASN A:47 , ARG A:57 , HIS A:60 , LYS A:70 , ARG A:117 , LEU A:128 , TYR A:130 , TYR A:136 , GLU A:141 , ARG A:166 , HOH A:444 , HOH A:448 , HOH A:451 , HOH A:453 , HOH A:466 , HOH A:506 , HOH A:513 , HIS B:17 , ARG B:21 , SER B:24 , GLU B:26 , VAL D:15
BINDING SITE FOR RESIDUE 18T A 303
04
AC4
SOFTWARE
HIS A:17 , ARG A:21 , SER A:24 , GLU A:26 , HOH A:521 , GLN B:45 , ASN B:47 , ARG B:57 , HIS B:60 , LYS B:70 , ARG B:117 , LEU B:128 , TYR B:130 , TYR B:136 , GLU B:141 , ARG B:166 , HOH B:402 , HOH B:408 , HOH B:486 , HOH B:494 , HOH B:495 , VAL C:15
BINDING SITE FOR RESIDUE 18T B 301
05
AC5
SOFTWARE
THR B:62 , GLN B:68 , TYR B:136 , ALA B:137 , GLU B:141 , HOH B:487 , HOH B:491
BINDING SITE FOR RESIDUE EDO B 302
06
AC6
SOFTWARE
HIS C:17 , ASP C:19 , GLY C:22 , ARG C:23 , SER C:24 , ARG D:57 , 18T D:303
BINDING SITE FOR RESIDUE EDO C 301
07
AC7
SOFTWARE
VAL B:15 , HIS B:17 , GLN C:45 , ASN C:47 , ARG C:57 , HIS C:60 , LYS C:70 , ARG C:117 , TYR C:130 , TYR C:136 , GLU C:141 , ARG C:166 , HOH C:405 , HOH C:440 , HOH C:444 , HOH C:471 , HOH C:472 , HOH C:477 , HIS D:17 , ARG D:21 , GLU D:26 , EDO D:302
BINDING SITE FOR RESIDUE 18T C 302
08
AC8
SOFTWARE
GLN C:12 , ARG C:29 , TYR C:71 , HOH C:433
BINDING SITE FOR RESIDUE EDO C 303
09
AC9
SOFTWARE
GLN D:12 , ARG D:29 , TYR D:71 , HOH D:451
BINDING SITE FOR RESIDUE EDO D 301
10
BC1
SOFTWARE
ARG C:57 , 18T C:302 , HIS D:17 , ASP D:19 , GLY D:22 , ARG D:23 , SER D:24
BINDING SITE FOR RESIDUE EDO D 302
11
BC2
SOFTWARE
VAL A:15 , HIS A:17 , HIS C:17 , ARG C:21 , GLU C:26 , EDO C:301 , HOH C:422 , GLN D:45 , ASN D:47 , ARG D:57 , HIS D:60 , LYS D:70 , ARG D:117 , TYR D:130 , TYR D:136 , GLU D:141 , ARG D:166 , HOH D:428 , HOH D:434 , HOH D:435 , HOH D:445 , HOH D:462 , HOH D:464 , HOH D:480
BINDING SITE FOR RESIDUE 18T D 303
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4hmza_ (A:)
1b: SCOP_d4hmzb_ (B:)
1c: SCOP_d4hmzc_ (C:)
1d: SCOP_d4hmzd_ (D:)
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Class
:
All beta proteins
(24004)
Fold
:
Double-stranded beta-helix
(580)
Superfamily
:
RmlC-like cupins
(220)
Family
:
automated matches
(27)
Protein domain
:
automated matches
(27)
Streptomyces bikiniensis [TaxId: 1896]
(3)
1a
d4hmza_
A:
1b
d4hmzb_
B:
1c
d4hmzc_
C:
1d
d4hmzd_
D:
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CATH Domains
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Asymmetric Unit 1
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Asym.Unit (146 KB)
Header - Asym.Unit
Biol.Unit 1 (71 KB)
Header - Biol.Unit 1
Biol.Unit 2 (72 KB)
Header - Biol.Unit 2
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