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4HM8
Asym. Unit
Info
Asym.Unit (235 KB)
Biol.Unit 1 (678 KB)
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(1)
Title
:
NAPHTHALENE 1,2-DIOXYGENASE BOUND TO THIOANISOLE
Authors
:
D. J. Ferraro, S. Ramaswamy
Date
:
17 Oct 12 (Deposition) - 30 Oct 13 (Release) - 06 Apr 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (3x)
Keywords
:
Oxidoreductase-Oxidoreductase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. J. Ferraro, S. Ramaswamy
Naphthalene 1, 2-Dioxygenase Bound To Thioanisole
To Be Published
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Hetero Components
(5, 15)
Info
All Hetero Components
1a: (METHYLSULFANYL)BENZENE (16Ra)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
4a: FE2/S2 (INORGANIC) CLUSTER (FESa)
3a: FE (III) ION (FEa)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
View:
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Label:
No.
Name
Count
Type
Full Name
1
16R
1
Ligand/Ion
(METHYLSULFANYL)BENZENE
2
EDO
8
Ligand/Ion
1,2-ETHANEDIOL
3
FE
1
Ligand/Ion
FE (III) ION
4
FES
1
Ligand/Ion
FE2/S2 (INORGANIC) CLUSTER
5
SO4
4
Ligand/Ion
SULFATE ION
[
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LEU A:31 , PHE A:35 , ALA A:36 , MET A:59 , GLY A:60 , ILE A:61 , ASP A:62 , PHE A:152 , TYR A:376 , GLN A:377
BINDING SITE FOR RESIDUE EDO A 1001
02
AC2
SOFTWARE
HIS A:18 , VAL A:80 , CYS A:81 , ARG A:82 , SER A:381 , ASP A:382 , HOH A:1693 , HOH A:1695 , HOH A:1696
BINDING SITE FOR RESIDUE EDO A 1002
03
AC3
SOFTWARE
LEU A:128 , ASN A:129 , LYS A:130 , LYS A:131 , HOH A:1651
BINDING SITE FOR RESIDUE SO4 A 1003
04
AC4
SOFTWARE
CYS A:81 , HIS A:83 , ARG A:84 , CYS A:101 , HIS A:104 , TRP A:106
BINDING SITE FOR RESIDUE FES A 1004
05
AC5
SOFTWARE
HIS A:208 , HIS A:213 , ASP A:362 , HOH A:1799
BINDING SITE FOR RESIDUE FE A 1005
06
AC6
SOFTWARE
ASN A:201 , ASP A:205 , VAL A:209 , HIS A:295 , ASN A:297
BINDING SITE FOR RESIDUE 16R A 1006
07
AC7
SOFTWARE
PRO A:49 , ALA A:50 , ASP A:53 , HOH A:1670 , HOH A:1710 , ARG B:77 , TYR B:78 , LYS B:79 , LEU B:80
BINDING SITE FOR RESIDUE EDO A 1007
08
AC8
SOFTWARE
PRO A:118 , PHE A:119 , HOH A:1676 , HOH A:1699
BINDING SITE FOR RESIDUE EDO A 1008
09
AC9
SOFTWARE
LYS A:245 , TRP A:439 , HIS A:440 , HOH A:1285 , HOH A:1513 , HOH A:1515 , HOH A:1518
BINDING SITE FOR RESIDUE SO4 A 1009
10
BC1
SOFTWARE
TYR B:87 , GLN B:101 , MET B:190 , VAL B:191 , PHE B:192 , HOH B:1214 , HOH B:1215 , HOH B:1331
BINDING SITE FOR RESIDUE EDO B 1001
11
BC2
SOFTWARE
HOH A:1447 , ASN B:90 , GLN B:93 , HOH B:1135
BINDING SITE FOR RESIDUE EDO B 1002
12
BC3
SOFTWARE
ARG B:137 , ALA B:157 , GLU B:159 , PHE B:176 , VAL B:177 , ASP B:178 , HOH B:1328
BINDING SITE FOR RESIDUE EDO B 1003
13
BC4
SOFTWARE
GLN B:62 , GLN B:64 , HOH B:1157 , HOH B:1158 , HOH B:1243 , HOH B:1244
BINDING SITE FOR RESIDUE SO4 B 1004
14
BC5
SOFTWARE
GLY B:58 , SER B:59 , GLY B:165 , GLU B:166 , LYS B:171 , HOH B:1333
BINDING SITE FOR RESIDUE SO4 B 1005
15
BC6
SOFTWARE
GLU B:82 , ALA B:83 , HOH B:1159
BINDING SITE FOR RESIDUE EDO B 1006
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d4hm8a1 (A:1-154)
2a: SCOP_d4hm8b_ (B:)
3a: SCOP_d4hm8a2 (A:155-446)
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Classes
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(
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Folds
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
ISP domain
(115)
Superfamily
:
ISP domain
(115)
Family
:
Ring hydroxylating alpha subunit ISP domain
(40)
Protein domain
:
Naphthalene 1,2-dioxygenase alpha subunit, N-domain
(27)
Pseudomonas sp. [TaxId: 69011]
(13)
1a
d4hm8a1
A:1-154
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cystatin-like
(403)
Superfamily
:
NTF2-like
(231)
Family
:
Ring hydroxylating beta subunit
(46)
Protein domain
:
Naphthalene 1,2-dioxygenase beta subunit
(28)
Pseudomonas sp. [TaxId: 69011]
(10)
2a
d4hm8b_
B:
Fold
:
TBP-like
(289)
Superfamily
:
Bet v1-like
(158)
Family
:
Ring hydroxylating alpha subunit catalytic domain
(42)
Protein domain
:
Naphthalene 1,2-dioxygenase alpha subunit, C-domain
(29)
Pseudomonas sp. [TaxId: 69011]
(14)
3a
d4hm8a2
A:155-446
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (235 KB)
Header - Asym.Unit
Biol.Unit 1 (678 KB)
Header - Biol.Unit 1
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