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4HM0
Biol. Unit 1
Info
Asym.Unit (123 KB)
Biol.Unit 1 (340 KB)
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(1)
Title
:
NAPHTHALENE 1,2-DIOXYGENASE BOUND TO INDOLE-3-ACETATE
Authors
:
D. J. Ferraro, S. Ramaswamy
Date
:
17 Oct 12 (Deposition) - 30 Oct 13 (Release) - 30 Oct 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (3x)
Keywords
:
Oxidoreductase-Oxidoreductase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. J. Ferraro, S. Ramaswamy
Naphthalene 1, 2-Dioxygenase Bound To Indole-3-Acetate
To Be Published
[
close entry info
]
Hetero Components
(4, 66)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
3a: FE2/S2 (INORGANIC) CLUSTER (FESa)
2a: FE (III) ION (FEa)
4a: 1H-INDOL-3-YLACETIC ACID (IACa)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
45
Ligand/Ion
1,2-ETHANEDIOL
2
FE
-1
Ligand/Ion
FE (III) ION
3
FES
3
Ligand/Ion
FE2/S2 (INORGANIC) CLUSTER
4
IAC
3
Ligand/Ion
1H-INDOL-3-YLACETIC ACID
5
SO4
15
Ligand/Ion
SULFATE ION
[
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Sites
(23, 23)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LEU A:31 , PHE A:35 , ALA A:36 , MET A:59 , GLY A:60 , ILE A:61 , ASP A:62 , PHE A:152 , TYR A:376 , GLN A:377
BINDING SITE FOR RESIDUE EDO A 501
02
AC2
SOFTWARE
HIS A:18 , CYS A:81 , ARG A:82 , SER A:381 , ASP A:382 , LEU A:383 , HOH A:783 , HOH A:807 , HOH A:808
BINDING SITE FOR RESIDUE EDO A 502
03
AC3
SOFTWARE
GLU A:24 , LYS A:374 , HOH A:809 , HOH A:810
BINDING SITE FOR RESIDUE EDO A 503
04
AC4
SOFTWARE
HIS A:208 , HIS A:213 , ASP A:362 , IAC A:505
BINDING SITE FOR RESIDUE FE A 504
05
AC5
SOFTWARE
ASN A:201 , ASP A:205 , HIS A:208 , HIS A:213 , HIS A:295 , ASN A:297 , PHE A:352 , ASP A:362 , FE A:504
BINDING SITE FOR RESIDUE IAC A 505
06
AC6
SOFTWARE
TRP A:439 , HOH A:671 , HOH A:712
BINDING SITE FOR RESIDUE SO4 A 506
07
AC7
SOFTWARE
LEU A:128 , ASN A:129 , LYS A:130 , LYS A:131
BINDING SITE FOR RESIDUE SO4 A 507
08
AC8
SOFTWARE
CYS A:81 , HIS A:83 , ARG A:84 , CYS A:101 , HIS A:104 , TRP A:106
BINDING SITE FOR RESIDUE FES A 508
09
AC9
SOFTWARE
VAL A:183 , ARG A:342 , ASP A:346 , HOH A:724
BINDING SITE FOR RESIDUE EDO A 509
10
BC1
SOFTWARE
THR A:56 , GLU A:92 , PRO A:186 , LYS A:188 , TRP A:327 , GLU B:570 , ARG B:683
BINDING SITE FOR RESIDUE EDO A 510
11
BC2
SOFTWARE
ASP A:361 , ASP A:364 , HOH A:603 , HOH A:816 , HOH A:857 , TRP B:608 , GLY B:609 , ARG B:648
BINDING SITE FOR RESIDUE EDO A 511
12
BC3
SOFTWARE
GLU A:142 , SER A:143 , EDO A:513
BINDING SITE FOR RESIDUE EDO A 512
13
BC4
SOFTWARE
SER A:73 , ILE A:74 , SER A:143 , EDO A:512 , HOH A:874
BINDING SITE FOR RESIDUE EDO A 513
14
BC5
SOFTWARE
ASP A:396 , ALA A:397 , VAL A:398 , PRO A:400 , HIS A:440 , HOH A:716 , HOH A:811
BINDING SITE FOR RESIDUE EDO A 514
15
BC6
SOFTWARE
PRO A:337 , GLU A:338 , HOH A:688
BINDING SITE FOR RESIDUE SO4 A 515
16
BC7
SOFTWARE
ASP B:546 , ARG B:615 , PHE B:616 , EDO B:705 , HOH B:851
BINDING SITE FOR RESIDUE EDO B 701
17
BC8
SOFTWARE
GLY B:559 , SER B:560 , GLY B:666 , GLU B:667 , LYS B:672 , HOH B:914
BINDING SITE FOR RESIDUE SO4 B 702
18
BC9
SOFTWARE
TYR B:588 , MET B:691 , VAL B:692 , PHE B:693 , HOH B:841 , HOH B:884
BINDING SITE FOR RESIDUE EDO B 703
19
CC1
SOFTWARE
ASN B:591 , GLN B:594 , HOH B:840 , HOH B:904
BINDING SITE FOR RESIDUE EDO B 704
20
CC2
SOFTWARE
ARG B:638 , ALA B:658 , GLU B:660 , VAL B:678 , ASP B:679 , EDO B:701 , HOH B:868
BINDING SITE FOR RESIDUE EDO B 705
21
CC3
SOFTWARE
VAL A:190 , GLN B:686 , THR B:687 , HIS B:688
BINDING SITE FOR RESIDUE EDO B 706
22
CC4
SOFTWARE
THR B:535 , THR B:539 , ILE B:620 , THR B:621 , ASN B:622
BINDING SITE FOR RESIDUE EDO B 707
23
CC5
SOFTWARE
LYS B:632 , ARG B:665 , GLY B:669 , ARG B:671 , HOH B:899
BINDING SITE FOR RESIDUE SO4 B 708
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d4hm0a1 (A:1-154)
2a: SCOP_d4hm0b_ (B:)
3a: SCOP_d4hm0a2 (A:155-448)
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Classes
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Folds
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
ISP domain
(115)
Superfamily
:
ISP domain
(115)
Family
:
Ring hydroxylating alpha subunit ISP domain
(40)
Protein domain
:
Naphthalene 1,2-dioxygenase alpha subunit, N-domain
(27)
Pseudomonas sp. [TaxId: 69011]
(13)
1a
d4hm0a1
A:1-154
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cystatin-like
(403)
Superfamily
:
NTF2-like
(231)
Family
:
Ring hydroxylating beta subunit
(46)
Protein domain
:
Naphthalene 1,2-dioxygenase beta subunit
(28)
Pseudomonas sp. [TaxId: 69011]
(10)
2a
d4hm0b_
B:
Fold
:
TBP-like
(289)
Superfamily
:
Bet v1-like
(158)
Family
:
Ring hydroxylating alpha subunit catalytic domain
(42)
Protein domain
:
Naphthalene 1,2-dioxygenase alpha subunit, C-domain
(29)
Pseudomonas sp. [TaxId: 69011]
(14)
3a
d4hm0a2
A:155-448
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
Asymmetric Unit 2
Asymmetric Unit 3
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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