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4HEI
Biol. Unit 2
Info
Asym.Unit (41 KB)
Biol.Unit 1 (19 KB)
Biol.Unit 2 (19 KB)
Biol.Unit 3 (36 KB)
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(1)
Title
:
2A X-RAY STRUCTURE OF HPF FROM VIBRIO CHOLERAE
Authors
:
H. De Bari, E. A. Berry
Date
:
03 Oct 12 (Deposition) - 24 Oct 12 (Release) - 21 Jun 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
Beta-Alpha-Beta-Beta-Beta-Alpha Secondary Structure Fold Similar To Yfia Of E. Coli, Associates With 100S Ribosome Dimers, Stationary Phase, Translation Inhibition, Translation, Drbd, Double-Stranded Rna Binding Domain, Inhibits Translation By Binding The 30S Ribosome
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. De Bari, E. A. Berry
Structure Of Vibrio Cholerae Ribosome Hibernation Promoting Factor.
Acta Crystallogr. , Sect. F V. 69 228 2013
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Hetero Components
(3, 9)
Info
All Hetero Components
1a: COBALT (III) ION (3COa)
1b: COBALT (III) ION (3COb)
1c: COBALT (III) ION (3COc)
1d: COBALT (III) ION (3COd)
2a: THIOCYANATE ION (SCNa)
2b: THIOCYANATE ION (SCNb)
2c: THIOCYANATE ION (SCNc)
2d: THIOCYANATE ION (SCNd)
2e: THIOCYANATE ION (SCNe)
2f: THIOCYANATE ION (SCNf)
3a: UNKNOWN LIGAND (UNLa)
3b: UNKNOWN LIGAND (UNLb)
3c: UNKNOWN LIGAND (UNLc)
3d: UNKNOWN LIGAND (UNLd)
3e: UNKNOWN LIGAND (UNLe)
3f: UNKNOWN LIGAND (UNLf)
3g: UNKNOWN LIGAND (UNLg)
View:
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Label:
No.
Name
Count
Type
Full Name
1
3CO
2
Ligand/Ion
COBALT (III) ION
2
SCN
5
Ligand/Ion
THIOCYANATE ION
3
UNL
2
Ligand/Ion
UNKNOWN LIGAND
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:55 , GLU B:51 , SCN B:104 , SCN B:105
BINDING SITE FOR RESIDUE 3CO A 101
02
AC2
SOFTWARE
HIS A:62 , HIS A:64 , SCN A:103 , GLU B:60
BINDING SITE FOR RESIDUE 3CO A 102
03
AC3
SOFTWARE
GLN A:38 , GLU A:51 , THR A:53 , HIS A:62 , HIS A:64 , 3CO A:102 , HIS B:55 , GLU B:60
BINDING SITE FOR RESIDUE SCN A 103
04
AC4
SOFTWARE
GLU A:60 , HIS B:62 , HIS B:64 , SCN B:103
BINDING SITE FOR RESIDUE 3CO B 102
05
AC5
SOFTWARE
HIS A:55 , GLU A:60 , GLN B:38 , GLU B:51 , THR B:53 , HIS B:62 , HIS B:64 , 3CO B:102
BINDING SITE FOR RESIDUE SCN B 103
06
AC6
SOFTWARE
HIS A:36 , HIS A:55 , 3CO A:101 , HIS B:8 , ARG B:42 , GLU B:51 , SCN B:105
BINDING SITE FOR RESIDUE SCN B 104
07
AC7
SOFTWARE
HIS A:55 , GLU A:60 , 3CO A:101 , ARG B:42 , GLU B:51 , HIS B:64 , SCN B:104
BINDING SITE FOR RESIDUE SCN B 105
08
AC8
SOFTWARE
GLU A:51 , HIS B:55 , GLU B:60 , SCN B:107 , SCN B:108
BINDING SITE FOR RESIDUE 3CO B 106
09
AC9
SOFTWARE
HIS A:8 , ARG A:42 , GLU A:51 , HIS B:36 , HIS B:55 , 3CO B:106 , SCN B:108
BINDING SITE FOR RESIDUE SCN B 107
10
BC1
SOFTWARE
ASP A:32 , ARG A:42 , GLU A:51 , HIS B:55 , GLU B:60 , 3CO B:106 , SCN B:107 , HOH B:202 , HOH B:203
BINDING SITE FOR RESIDUE SCN B 108
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d4heia_ (A:)
1b: SCOP_d4heib_ (B:)
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Protein Domains
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Organisms
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)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ribosome binding protein Y (YfiA homologue)
(11)
Superfamily
:
Ribosome binding protein Y (YfiA homologue)
(11)
Family
:
automated matches
(5)
Protein domain
:
automated matches
(5)
Vibrio cholerae [TaxId: 243277]
(1)
1a
d4heia_
A:
1b
d4heib_
B:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(0, 0)
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Chain B
Asymmetric Unit 1
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Asym.Unit (41 KB)
Header - Asym.Unit
Biol.Unit 1 (19 KB)
Header - Biol.Unit 1
Biol.Unit 2 (19 KB)
Header - Biol.Unit 2
Biol.Unit 3 (36 KB)
Header - Biol.Unit 3
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