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Asym. Unit
Info
Asym.Unit (233 KB)
Biol.Unit 1 (116 KB)
Biol.Unit 2 (114 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ARSAB IN COMPLEX WITH 5,6-DIMETHYLBENZIMIDAZOLE
Authors
:
S. A. Newmister, C. H. Chan, J. C. Escalante-Semerena, I. Rayment
Date
:
02 Oct 12 (Deposition) - 24 Oct 12 (Release) - 30 Jan 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.45
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. A. Newmister, C. H. Chan, J. C. Escalante-Semerena, I. Rayment
Structural Insights Into The Function Of The Nicotinate Mononucleotide:Phenol/P-Cresol Phosphoribosyltransferase (Arsab) Enzyme From Sporomusa Ovata.
Biochemistry V. 51 8571 2012
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Hetero Components
(2, 15)
Info
All Hetero Components
1a: 5,6-DIMETHYLBENZIMIDAZOLE (DMDa)
1b: 5,6-DIMETHYLBENZIMIDAZOLE (DMDb)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
View:
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Label:
No.
Name
Count
Type
Full Name
1
DMD
2
Ligand/Ion
5,6-DIMETHYLBENZIMIDAZOLE
2
EDO
13
Ligand/Ion
1,2-ETHANEDIOL
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:79 , THR A:83 , MET A:87 , MET A:177 , LEU A:317 , GLU A:319 , HOH A:901 , LYS B:29 , PRO B:30 , PHE B:327
BINDING SITE FOR RESIDUE DMD A 801
02
AC2
SOFTWARE
GLY A:178 , GLY A:180 , ASN A:181 , THR A:182
BINDING SITE FOR RESIDUE EDO A 802
03
AC3
SOFTWARE
PHE A:105 , HIS B:319 , EDO B:405 , HOH B:520 , HOH B:605 , HOH B:811
BINDING SITE FOR RESIDUE EDO B 401
04
AC4
SOFTWARE
HOH A:1053 , PHE B:276 , ALA B:277 , ALA B:278 , GLN B:296 , LEU B:297 , LYS B:298
BINDING SITE FOR RESIDUE EDO B 402
05
AC5
SOFTWARE
ILE B:160 , HOH B:601 , HIS D:39 , HOH D:521 , HOH D:658
BINDING SITE FOR RESIDUE EDO B 403
06
AC6
SOFTWARE
ARG B:124 , LYS B:125 , LYS B:126 , HOH B:537 , HOH B:666
BINDING SITE FOR RESIDUE EDO B 404
07
AC7
SOFTWARE
PHE A:105 , ASP A:328 , HIS B:100 , VAL B:101 , SER B:312 , ASN B:315 , EDO B:401 , HOH B:674
BINDING SITE FOR RESIDUE EDO B 405
08
AC8
SOFTWARE
TYR C:79 , THR C:83 , MET C:87 , MET C:177 , LEU C:317 , GLU C:319 , HOH C:904 , LYS D:29 , PRO D:30 , PHE D:327
BINDING SITE FOR RESIDUE DMD C 801
09
AC9
SOFTWARE
GLY C:178 , GLY C:180 , ASN C:181 , THR C:182
BINDING SITE FOR RESIDUE EDO C 802
10
BC1
SOFTWARE
GLU C:176 , ASP C:265 , GLY C:266 , LEU C:267 , ASN C:268 , THR C:269 , GLY C:318 , HOH C:905
BINDING SITE FOR RESIDUE EDO C 803
11
BC2
SOFTWARE
PHE C:105 , HIS D:319 , EDO D:404 , HOH D:594 , HOH D:750
BINDING SITE FOR RESIDUE EDO D 401
12
BC3
SOFTWARE
PHE D:276 , LEU D:286 , VAL D:291 , PRO D:292 , ALA D:293 , HOH D:513 , HOH D:514 , HOH D:591
BINDING SITE FOR RESIDUE EDO D 402
13
BC4
SOFTWARE
HOH C:986 , PHE D:276 , ALA D:277 , ALA D:278 , GLN D:296 , LEU D:297 , LYS D:298
BINDING SITE FOR RESIDUE EDO D 403
14
BC5
SOFTWARE
PHE C:105 , ASP C:328 , HIS D:100 , VAL D:101 , SER D:312 , ASN D:315 , EDO D:401 , HOH D:687
BINDING SITE FOR RESIDUE EDO D 404
15
BC6
SOFTWARE
ASN B:50 , ARG B:54 , HOH B:592 , HOH B:632 , ILE D:261 , LEU D:288 , LEU D:289 , ASP D:290
BINDING SITE FOR RESIDUE EDO D 405
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4hdra_ (A:)
1b: SCOP_d4hdrb_ (B:)
1c: SCOP_d4hdrc_ (C:)
1d: SCOP_d4hdrd_ (D:)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
(41)
Superfamily
:
Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
(41)
Family
:
automated matches
(5)
Protein domain
:
automated matches
(5)
Sporomusa ovata [TaxId: 2378]
(5)
1a
d4hdra_
A:
1b
d4hdrb_
B:
1c
d4hdrc_
C:
1d
d4hdrd_
D:
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (233 KB)
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Biol.Unit 1 (116 KB)
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