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4HDB
Asym. Unit
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Asym.Unit (83 KB)
Biol.Unit 1 (79 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HIV-1 PROTEASE MUTANTS D30N COMPLEXED WITH INHIBITOR GRL-0519
Authors
:
H. Zhang, Y. -F. Wang, C. H. Shen, J. Agniswamy, I. T. Weber
Date
:
02 Oct 12 (Deposition) - 14 Aug 13 (Release) - 14 Aug 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.49
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Aspartic Acid Protease, Drug Resistance, Hiv-1 Protease Inhibitor Grl-0519, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Zhang, Y. F. Wang, C. H. Shen, J. Agniswamy, K. V. Rao, C. X. Xu, A. K. Ghosh, R. W. Harrison, I. T. Weber
Novel P2 Tris-Tetrahydrofuran Group In Antiviral Compound 1 (Grl-0519) Fills The S2 Binding Pocket Of Selected Mutants Of Hiv-1 Protease.
J. Med. Chem. V. 56 1074 2013
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Hetero Components
(3, 4)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: (3R,3AS,3BR,6AS,7AS)-OCTAHYDRODIFU... (G52a)
3a: SODIUM ION (NAa)
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No.
Name
Count
Type
Full Name
1
CL
2
Ligand/Ion
CHLORIDE ION
2
G52
1
Ligand/Ion
(3R,3AS,3BR,6AS,7AS)-OCTAHYDRODIFURO[2,3-B:3',2'-D]FURAN-3-YL [(1S,2R)-1-BENZYL-2-HYDROXY-3-{[(4-METHOXYPHENYL)SULFONYL](2-METHYLPROPYL)AMINO}PROPYL]CARBAMATE
3
NA
1
Ligand/Ion
SODIUM ION
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Sites
(4, 4)
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All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:8 , ASP A:25 , GLY A:27 , ALA A:28 , ASP A:29 , ASN A:30 , GLY A:48 , GLY A:49 , ILE A:50 , PRO A:81 , VAL A:82 , ILE A:84 , HOH A:1001 , HOH A:1002 , HOH A:1092 , HOH A:1093 , ASP B:125 , GLY B:127 , ALA B:128 , ASP B:129 , ASN B:130 , VAL B:132 , GLY B:148 , GLY B:149 , ILE B:150 , PRO B:181 , VAL B:182 , HOH B:307 , HOH B:383
BINDING SITE FOR RESIDUE G52 A 401
2
AC2
SOFTWARE
ASP A:60 , HOH A:1003 , HOH A:1004 , HOH A:1005 , HOH A:1006 , HOH A:1007
BINDING SITE FOR RESIDUE NA A 402
3
AC3
SOFTWARE
THR A:74 , ASN A:88 , HOH A:1074 , ARG B:141
BINDING SITE FOR RESIDUE CL A 403
4
AC4
SOFTWARE
TRP B:106
BINDING SITE FOR RESIDUE CL B 201
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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SCOP Domains
(1, 2)
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1a: SCOP_d4hdba_ (A:)
1b: SCOP_d4hdbb_ (B:)
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Class
:
All beta proteins
(24004)
Fold
:
Acid proteases
(1120)
Superfamily
:
Acid proteases
(1120)
Family
:
Retroviral protease (retropepsin)
(591)
Protein domain
:
Human immunodeficiency virus type 1 protease
(514)
Human immunodeficiency virus type 1 [TaxId: 11676]
(424)
1a
d4hdba_
A:
1b
d4hdbb_
B:
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CATH Domains
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Asymmetric Unit 1
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