PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
4HC6
Asym. Unit
Info
Asym.Unit (50 KB)
Biol.Unit 1 (134 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
MYCOBACTERIUM TUBERCULOSIS RV2523CE77A X-RAY STRUCTURE SOLVED WITH 1.8 ANGSTROM RESOLUTION
Authors
:
H. -B. Kim, H. -B. Kim, G. -W. Han, L. -W. Hung, C. T. Terwilliger, C. -Y. Ki Integrated Center For Structure And Function Innovation (Is Center For Innovative Membrane Protein Technologies (Jcimpt
Date
:
28 Sep 12 (Deposition) - 28 Nov 12 (Release) - 19 Jun 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (3x)
Keywords
:
Structural Genomics, Protein Structure Initiative, Integrated Center For Structure And Function Innovation, Isfi, Transferase, Acyl- Carrier Protein Synthase, Coa Binding, Psi-Biology,
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. -B. Kim, G. -W. Han, L. -W. Hung, C. T. Terwilliger, C. -Y. Kim
Mycobacterium Tuberculosis Rv2523Ce77A X-Ray Structure Solved With 1. 8 Angstrom Resolution
To Be Published
[
close entry info
]
Hetero Components
(4, 13)
Info
All Hetero Components
1a: BROMIDE ION (BRa)
1b: BROMIDE ION (BRb)
1c: BROMIDE ION (BRc)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
2f: CHLORIDE ION (CLf)
2g: CHLORIDE ION (CLg)
3a: GLYCEROL (GOLa)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BR
3
Ligand/Ion
BROMIDE ION
2
CL
7
Ligand/Ion
CHLORIDE ION
3
GOL
1
Ligand/Ion
GLYCEROL
4
NA
2
Ligand/Ion
SODIUM ION
[
close Hetero Component info
]
Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TRP A:54 , GLU A:58 , GLN A:71 , ARG A:72 , HOH A:316 , HOH A:318 , HOH A:379
BINDING SITE FOR RESIDUE GOL A 201
02
AC2
SOFTWARE
SER A:113 , LEU A:114
BINDING SITE FOR RESIDUE CL A 202
03
AC3
SOFTWARE
ASP A:88 , MET A:89
BINDING SITE FOR RESIDUE CL A 203
04
AC4
SOFTWARE
SER A:12
BINDING SITE FOR RESIDUE CL A 204
05
AC5
SOFTWARE
PHE A:31 , PRO A:33 , ARG A:36
BINDING SITE FOR RESIDUE CL A 205
06
AC6
SOFTWARE
ALA A:77
BINDING SITE FOR RESIDUE CL A 206
07
AC7
SOFTWARE
THR A:25 , VAL A:26 , ARG A:68
BINDING SITE FOR RESIDUE CL A 207
08
AC8
SOFTWARE
LYS A:62 , THR A:115 , HIS A:116 , HOH A:311
BINDING SITE FOR RESIDUE CL A 208
09
AC9
SOFTWARE
VAL A:6 , NA A:210 , HOH A:306 , HOH A:328 , HOH A:350
BINDING SITE FOR RESIDUE NA A 209
10
BC1
SOFTWARE
VAL A:6 , VAL A:112 , NA A:209 , HOH A:306 , HOH A:314 , HOH A:328
BINDING SITE FOR RESIDUE NA A 210
11
BC2
SOFTWARE
ARG A:68 , PRO A:73 , VAL A:74 , ARG A:92
BINDING SITE FOR RESIDUE BR A 211
12
BC3
SOFTWARE
TYR A:104
BINDING SITE FOR RESIDUE BR A 212
13
BC4
SOFTWARE
ARG A:53 , LYS A:57 , VAL A:85
BINDING SITE FOR RESIDUE BR A 213
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d4hc6a_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
4'-phosphopantetheinyl transferase
(26)
Superfamily
:
4'-phosphopantetheinyl transferase
(26)
Family
:
automated matches
(19)
Protein domain
:
automated matches
(19)
Mycobacterium tuberculosis [TaxId: 1773]
(5)
1a
d4hc6a_
A:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (50 KB)
Header - Asym.Unit
Biol.Unit 1 (134 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
4HC6
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
